PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022739365.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family C3H
Protein Properties Length: 983aa    MW: 109093 Da    PI: 8.9179
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022739365.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.2e-09208229325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                     t lC++f++ G C++G++C+F H
  XP_022739365.1 208 TQLCKDFMA-GRCRRGSQCHFLH 229
                     78*******.************* PP

Sequence ? help Back to Top
Protein Sequence    Length: 983 aa     Download sequence    
MENVIGFGGR RDHTAFIRIS ATGEMSGSRK RGSKWDSKEE RQHSLENVRD SAWPAKAGMS  60
FHDRESEHGY FSPEVGRNCN KWSVAKASDM MKSKHGLPSR ESLPGSRGGQ KDDNINVDCV  120
KNWKTTTLWD GDETYSMKMS PGLEDWRQQN RHHSPKSDWS RSYSFTHRSR SRSWSRSRSR  180
SRSRSPVRGI RRQSGFHERT RSRSGVSTQL CKDFMAGRCR RGSQCHFLHQ DIQSDEDGWD  240
NRQKRGGMSK YFTPNDGKDY LIKSGRSTDC CADYLKGNCR KGASCRFAHD GASDGFSRGS  300
INEVSREREN DKRNRVTTPE RHVEHEARRS MDVPCKYFAA GNCRSGKYCR FSHHGEARAS  360
PERRSRGDRG GWGQTSVSVD KLLGGAKSRD ADASFNVEKS WNAPKWSNAN ASNEGEKSWS  420
GPKWGDADAS NEVDKSWTGS KWSDTGAYLG ANKLNKETNG KMGASEPRFS DWSLDDRWQH  480
DFDASGKNGE SNVHYKTVDI DKDEAIPRKI ENAGVSMGAG ESLGDMEMSP EWNYGIHSSV  540
KIQHSRSSKS TPVDSSVPAQ EKNMTKDASG WVHDELAASQ PLSTEKSNFQ QDHMMRGSSA  600
VALPCDSNDI SRNTSVSRID LNFSTNNLSM PSFDQPGPSS SSLPYSSLGA VGQSQVAIPS  660
NEVNMKVMQN SLLFQEEKPS NKLNIGDTNL LPGNSGTQST QKMVSSEQLT QLTNLSASLA  720
QLFGKGQQLP QLHVALTAHD PMQVTSFPNS GGPVEPDSVP TVQPGQDIIF QEQYDPISDS  780
IGPVKTQDTN TKALVISVHP VSQKNTTDGK PELSTNKLLS SSHVDSTNGG DFPNDHSSKR  840
EPDFDSHKLN QLKPLASSEV TKENGVEETK KAEDENKNGP SENIDAEDRT DEGKKSKDGK  900
GIRAFKFALV EFVKDLLKPT WKEGQIGKEA YKNIVKKVVD KVTATMQGTN IPQTPEKIDQ  960
YLSFSKPKLS KLVQAYVEKF QKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176184RSRSRSRSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-18C3H family protein