PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022739365.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 983aa MW: 109093 Da PI: 8.9179 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.2 | 3.2e-09 | 208 | 229 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f++ G C++G++C+F H XP_022739365.1 208 TQLCKDFMA-GRCRRGSQCHFLH 229 78*******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 983 aa Download sequence |
MENVIGFGGR RDHTAFIRIS ATGEMSGSRK RGSKWDSKEE RQHSLENVRD SAWPAKAGMS 60 FHDRESEHGY FSPEVGRNCN KWSVAKASDM MKSKHGLPSR ESLPGSRGGQ KDDNINVDCV 120 KNWKTTTLWD GDETYSMKMS PGLEDWRQQN RHHSPKSDWS RSYSFTHRSR SRSWSRSRSR 180 SRSRSPVRGI RRQSGFHERT RSRSGVSTQL CKDFMAGRCR RGSQCHFLHQ DIQSDEDGWD 240 NRQKRGGMSK YFTPNDGKDY LIKSGRSTDC CADYLKGNCR KGASCRFAHD GASDGFSRGS 300 INEVSREREN DKRNRVTTPE RHVEHEARRS MDVPCKYFAA GNCRSGKYCR FSHHGEARAS 360 PERRSRGDRG GWGQTSVSVD KLLGGAKSRD ADASFNVEKS WNAPKWSNAN ASNEGEKSWS 420 GPKWGDADAS NEVDKSWTGS KWSDTGAYLG ANKLNKETNG KMGASEPRFS DWSLDDRWQH 480 DFDASGKNGE SNVHYKTVDI DKDEAIPRKI ENAGVSMGAG ESLGDMEMSP EWNYGIHSSV 540 KIQHSRSSKS TPVDSSVPAQ EKNMTKDASG WVHDELAASQ PLSTEKSNFQ QDHMMRGSSA 600 VALPCDSNDI SRNTSVSRID LNFSTNNLSM PSFDQPGPSS SSLPYSSLGA VGQSQVAIPS 660 NEVNMKVMQN SLLFQEEKPS NKLNIGDTNL LPGNSGTQST QKMVSSEQLT QLTNLSASLA 720 QLFGKGQQLP QLHVALTAHD PMQVTSFPNS GGPVEPDSVP TVQPGQDIIF QEQYDPISDS 780 IGPVKTQDTN TKALVISVHP VSQKNTTDGK PELSTNKLLS SSHVDSTNGG DFPNDHSSKR 840 EPDFDSHKLN QLKPLASSEV TKENGVEETK KAEDENKNGP SENIDAEDRT DEGKKSKDGK 900 GIRAFKFALV EFVKDLLKPT WKEGQIGKEA YKNIVKKVVD KVTATMQGTN IPQTPEKIDQ 960 YLSFSKPKLS KLVQAYVEKF QKS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 184 | RSRSRSRSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-18 | C3H family protein |