PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022738597.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 431aa MW: 47254.6 Da PI: 7.8574 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.8 | 4.5e-09 | 110 | 131 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+++ + G C+yGd+C+F H+ XP_022738597.1 110 KVCNYWVQ-GNCNYGDKCRFLHS 131 68******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence |
MDLDGSNRSV FNRLGGPSAA PTDSSKHQKV CYHWRAGKCT RFPCPFLHRE LPHPSGPAAS 60 AANGSGHPKR FADDSGFSGP APRRGPNFNN NHNKSWGRMG ANKVVRKTEK VCNYWVQGNC 120 NYGDKCRFLH SWSLGEGFTM LNHLDGHQKV VTGIALPAGM DKLYTGSKDE TVRAWDTNSG 180 QCMGVINLGG EVGCMISEGP WLFVGIPNVV KAWNTQTNQE LSLSGPVGQV YTMVVGNDLL 240 FAGTQDGTIL AWKFNAITNS FEPAASLKGH TLAVVSLVVG ANRLYSGSMD HSIKLWSLET 300 LQCLQTLTEH TNVVMSLLCW EQFLLSCSLD QTIKVWMATE NGLLEVTYTH NDEHGLLNLR 360 GMHDSESKPV LLCACNDNSV KLYDLPSFSE RGKTFAKQEI RTIEVGPGGL FFTGDGTGFR 420 VWKWAEPIAK P |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.1 | 0.0 | C3H family protein |