PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022738271.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 335aa MW: 38244.5 Da PI: 6.5888 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.4 | 4e-23 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e +snrqvt+skRr+gilKKA+ELS+LCd+ + +++fs+tgk XP_022738271.1 9 KRLEGYSNRQVTYSKRRTGILKKAKELSILCDIHIILLMFSPTGK 53 67899**************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence |
MGRVKLKIKR LEGYSNRQVT YSKRRTGILK KAKELSILCD IHIILLMFSP TGKPTLFLGE 60 RSNIEEVIEK FAQLTPQERA KRKLESLEAL KKTFQKLDHD VNIQNFLGAT SQSVEEMTNE 120 VSMLEAHLTE VHKRLSYWSN PDKIDNIEHL TQMEDSLRES IERIRIHKGN FGKHHLMSLE 180 CANQFQNGIP MPIMIGGVQE AQPITWLPNN ENQQMLLHNE PKFLPHRDTE CSVNGSLACS 240 SGYFGSGKQT EIGNSGQVDN VVQENNALNE LGSNAWMNLQ LGEQYLYPPY VASNLLDNEK 300 LRPEMEVNLQ ENPAIYQVIS NFEIPRPMYN SGHQA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-110 | M-type_MADS family protein |