PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022738270.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

M-type_MADS

Protein Properties

Length: 336aa MW: 38343.6 Da PI: 6.5888

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022738270.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.3	4e-23	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e +snrqvt+skRr+gilKKA+ELS+LCd+ + +++fs+tgk XP_022738270.1 9 KRLEGYSNRQVTYSKRRTGILKKAKELSILCDIHIILLMFSPTGK 53 67899**************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MGRVKLKIKR LEGYSNRQVT YSKRRTGILK KAKELSILCD IHIILLMFSP TGKPTLFLGE 60 RSNIEEVIEK FAQLTPQERA KRKLESLEAL KKTFQKLDHD VNIQNFLGAT SQSVEEMTNE 120 VSMLEAHLTE VHKRLSYWSN PDKIDNIEHL TQMEDSLRES IERIRIHKGN FGKHHLMSLE 180 CANQVFQNGI PMPIMIGGVQ EAQPITWLPN NENQQMLLHN EPKFLPHRDT ECSVNGSLAC 240 SSGYFGSGKQ TEIGNSGQVD NVVQENNALN ELGSNAWMNL QLGEQYLYPP YVASNLLDNE 300 KLRPEMEVNL QENPAIYQVI SNFEIPRPMY NSGHQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-111	M-type_MADS family protein