PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022738212.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 354aa MW: 38899.8 Da PI: 7.0956

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022738212.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.4e-08	92	116	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_022738212.1 92 FKTKLCCKFRA-GTCPYITNCNFAHS 116 69*******.***********8 PP
2	zf-CCCH	18.6	3.3e-06	166	191	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_022738212.1 166 YKGRHCKKFYTEEGCPYGDNCTFLHD 191 78888********************7 PP
3	zf-CCCH	43	7.4e-14	233	258	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_022738212.1 233 WKTRICNKWELTGYCPFGNKCHFAHG 258 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MDYGRENVVH VIPINGPENW VPNSGDPSVW ATEEDYCVWN NHETSTDTPS NSSYDQRQPQ 60 SWSNSEQPPN KKQRNSSQEL NFRSKAIGKI FFKTKLCCKF RAGTCPYITN CNFAHSIEEL 120 RRPPPNWQEI VAAHEEDKGV LSEPREEFQI PSLGSSSFSG ESQRSYKGRH CKKFYTEEGC 180 PYGDNCTFLH DEHSKNRESV AISLGPGGYG GGGGGGAAGG AAGNGSNTKP SNWKTRICNK 240 WELTGYCPFG NKCHFAHGVG ELHRYGGGLV DVEAKDSSAT TSDSKQGGGV PSKTPVDTVA 300 APVPSVTHSD VYHLGVPSQR TSIVLQRPGQ RTIQKWKGPD KISRIYGDWI DDIE

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MDYGRENVVH VIPINGPENW VPNSGDPSVW ATEEDYCVWN NHETSTDTPS NSSYDQRQPQ  60
SWSNSEQPPN KKQRNSSQEL NFRSKAIGKI FFKTKLCCKF RAGTCPYITN CNFAHSIEEL  120
RRPPPNWQEI VAAHEEDKGV LSEPREEFQI PSLGSSSFSG ESQRSYKGRH CKKFYTEEGC  180
PYGDNCTFLH DEHSKNRESV AISLGPGGYG GGGGGGAAGG AAGNGSNTKP SNWKTRICNK  240
WELTGYCPFG NKCHFAHGVG ELHRYGGGLV DVEAKDSSAT TSDSKQGGGV PSKTPVDTVA  300
APVPSVTHSD VYHLGVPSQR TSIVLQRPGQ RTIQKWKGPD KISRIYGDWI DDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-125	C3H family protein