PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022738033.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

CO-like

Protein Properties

Length: 428aa MW: 48325.7 Da PI: 5.3144

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022738033.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.7	5.7e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC+ C ++ H+ H++v XP_022738033.1 16 ARACDGCMRKRARWYCAADDAFLCHGCDTSVHSAnqlasrHERV 59 578*****************************667888888876 PP
2	CCT	68.2	2.2e-23	374	417	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_022738033.1 374 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 417 9*****************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MISDKRAANA MGGKTARACD GCMRKRARWY CAADDAFLCH GCDTSVHSAN QLASRHERVR 60 LEIASSTFND SVMNGTTNQD APPAWHQGFT RKARTPRHSK SMSRQQKGEG KVLNLNQLDP 120 LVPEIGSEDG SVDENEEQLF CRVPVFDPFS AELGNMVTSD GDEVPMVNED GNLVFDYYGH 180 EETCEQNDDF HGFLPSDLDL AEFAADVESL LGVGPDEDTC DNKRIELLDC KEEEESNVFH 240 GGKIMKVKDE EGEEEKKEGK TACCCDSAFD VARASLNWSF DYESPTIDKE EEKVVPTIMD 300 GQRKTEMKRN MLLRLNYESV ITAWASQGSP WTSGSRPEFN PDYFMGSNPK EGHHLNGGIG 360 GIYRQARGNT DEEREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK GRFVKRTSFG 420 GTAFPYVN

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MISDKRAANA MGGKTARACD GCMRKRARWY CAADDAFLCH GCDTSVHSAN QLASRHERVR  60
LEIASSTFND SVMNGTTNQD APPAWHQGFT RKARTPRHSK SMSRQQKGEG KVLNLNQLDP  120
LVPEIGSEDG SVDENEEQLF CRVPVFDPFS AELGNMVTSD GDEVPMVNED GNLVFDYYGH  180
EETCEQNDDF HGFLPSDLDL AEFAADVESL LGVGPDEDTC DNKRIELLDC KEEEESNVFH  240
GGKIMKVKDE EGEEEKKEGK TACCCDSAFD VARASLNWSF DYESPTIDKE EEKVVPTIMD  300
GQRKTEMKRN MLLRLNYESV ITAWASQGSP WTSGSRPEFN PDYFMGSNPK EGHHLNGGIG  360
GIYRQARGNT DEEREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK GRFVKRTSFG  420
GTAFPYVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	385	401	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-100	CO-like family protein