PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022737339.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

CO-like

Protein Properties

Length: 461aa MW: 51801.6 Da PI: 5.4284

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022737339.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.2	5.1e-06	17	47	4	34
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C++++ +l+C++++ +lC+dC +H XP_022737339.1 17 HTCDTCQAAACTLYCHTDSAYLCDDCDKRIH 47 68****99****************999 PP
2	zf-B_box	24.3	6.5e-08	58	104	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 ++++C+ +++ + C + lC +C ++H + H++vp+ XP_022737339.1 58 RAWICTACKNAAAAVTCSADAASLCINCDIQIH-SvnplarrHSRVPI 104 679******9*******************.44888888999986 PP
3	CCT	67.8	2.8e-23	394	437	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re+++lRY+eKrk RkFeKkirY+sRKa+Ae+RpRvKGrF++++ XP_022737339.1 394 REEKVLRYREKRKARKFEKKIRYASRKAYAETRPRVKGRFARKT 437 9****************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MSKVDSGGYG YLRNWAHTCD TCQAAACTLY CHTDSAYLCD DCDKRIHVAN PMALSHQRAW 60 ICTACKNAAA AVTCSADAAS LCINCDIQIH SVNPLARRHS RVPIPPLPGL VCSSTSAHLD 120 DQLPGPMFDT ENEIAAPTVL NEEIDEDETD PWLLLGPDGT DNQTMSGFTY SEQLDEYMDV 180 VDTCTEHQFQ EQCSDQQQLL FVNYPDDSGS DSVVPVQIFE AKKPPQQEEK LMQQQQTHQQ 240 LQSIYFNTEH RGSKTKFTNT PSSSLSFVCF FVPLGNDFTF THSSLNVLLV VTVVVGPFLK 300 FSECKTVSEF RITIASDCFS IFTPSASRLD NVLPYNLLTP FFHYQVPMLL ATAGILPNAT 360 SNIPNSYTRF PTGTSDLFPD PLLLMPLQLT PVNREEKVLR YREKRKARKF EKKIRYASRK 420 AYAETRPRVK GRFARKTAME IEGDQLFSKE DYGYVPYSLS M

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MSKVDSGGYG YLRNWAHTCD TCQAAACTLY CHTDSAYLCD DCDKRIHVAN PMALSHQRAW  60
ICTACKNAAA AVTCSADAAS LCINCDIQIH SVNPLARRHS RVPIPPLPGL VCSSTSAHLD  120
DQLPGPMFDT ENEIAAPTVL NEEIDEDETD PWLLLGPDGT DNQTMSGFTY SEQLDEYMDV  180
VDTCTEHQFQ EQCSDQQQLL FVNYPDDSGS DSVVPVQIFE AKKPPQQEEK LMQQQQTHQQ  240
LQSIYFNTEH RGSKTKFTNT PSSSLSFVCF FVPLGNDFTF THSSLNVLLV VTVVVGPFLK  300
FSECKTVSEF RITIASDCFS IFTPSASRLD NVLPYNLLTP FFHYQVPMLL ATAGILPNAT  360
SNIPNSYTRF PTGTSDLFPD PLLLMPLQLT PVNREEKVLR YREKRKARKF EKKIRYASRK  420
AYAETRPRVK GRFARKTAME IEGDQLFSKE DYGYVPYSLS M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	5e-40	CO-like family protein