PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022737275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 18800.9 Da PI: 10.1494 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.5 | 3.6e-13 | 26 | 60 | 4 | 38 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevavi 38 + k n +vtf+k rng++KKA+E+ +LC+a++ +i XP_022737275.1 26 KRKNNLHVTFTKCRNGLFKKASEIRILCGAKIDII 60 668899**************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence |
MNSKCCENKK PGKTKGRQRT EFKQLKRKNN LHVTFTKCRN GLFKKASEIR ILCGAKIDII 60 LKELEKEKKR EKVTEEAKKA GNNGGLWWDI EAIDGMGVEG LEAYMKAMEN LKNNLMMRAN 120 GLTMANVMDT AAHADDHGYG FGFAHDQRFW GHIVKNIISM LDIVR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-12 | M-type_MADS family protein |