PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022736923.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C2H2

Protein Properties

Length: 438aa MW: 49250.6 Da PI: 9.0623

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022736923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.1e-06	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_022736923.1 56 YVCEICNQGFQRDQNLQMHRRRH 78 9*********************9 PP
2	zf-C2H2	16.1	3.2e-05	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_022736923.1 133 WVCEKCSKGYAVQSDYKAHLKTC 155 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MLANNSCSSV PSSEPFSCLE NGTNNNKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI 60 CNQGFQRDQN LQMHRRRHKV PWKLLKRESP VVKKRVFVCP EPSCLHHDPC HALGDLVGIK 120 KHFRRKHSNH KQWVCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA 180 CHMGRIRPES QALQPACLSR TASSPSRSSD TNFSTAPWPS LGLAKTSDTI FLSPRKDNSP 240 KNAHYHNLEL RLLTTSNPTE VSVTPKKDDN HSTQLQLSIG SSDVGDKIES SFTCTDKDAS 300 KKSAHQEIHE KPGFVASRLK EQAREQLRLA MAEKTYAEEA RQQAKRQIEL AEQEFAKAKR 360 IRQQSHAELE KAKALKDCAI KQINSTILQI TCHTCKQQFQ ARTPPEENSL VVSYISSALT 420 DGEVENDIRL NLTKATNT

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MLANNSCSSV PSSEPFSCLE NGTNNNKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI  60
CNQGFQRDQN LQMHRRRHKV PWKLLKRESP VVKKRVFVCP EPSCLHHDPC HALGDLVGIK  120
KHFRRKHSNH KQWVCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA  180
CHMGRIRPES QALQPACLSR TASSPSRSSD TNFSTAPWPS LGLAKTSDTI FLSPRKDNSP  240
KNAHYHNLEL RLLTTSNPTE VSVTPKKDDN HSTQLQLSIG SSDVGDKIES SFTCTDKDAS  300
KKSAHQEIHE KPGFVASRLK EQAREQLRLA MAEKTYAEEA RQQAKRQIEL AEQEFAKAKR  360
IRQQSHAELE KAKALKDCAI KQINSTILQI TCHTCKQQFQ ARTPPEENSL VVSYISSALT  420
DGEVENDIRL NLTKATNT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	32	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-141	C2H2 family protein