PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022734686.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 344aa MW: 38517.5 Da PI: 7.7604

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022734686.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	43.3	6e-14	265	290	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ ++ tG C+yGd C+FaHg XP_022734686.1 265 FKTELCNKWQDTGACPYGDHCQFAHG 290 79***********************8 PP
2	zf-CCCH	18.5	3.5e-06	303	327	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ C+yG rC+F H XP_022734686.1 303 YKTEVCRMVLAGDVCPYGHRCHFRH 327 9********55********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MNFTQLLFSG VLVRYHCIFN RFLLFQASVL SSQMLNYNGS TVYGDLAAKQ PNDHQSNGVY 60 SSSTTSSSAA AATFFSFYHP RLLMQQHQDM INRHSLCLTR LHEAAKENEA LRQENTALRF 120 VNRNLNKQLS ALIQASVQNH FASSDYSTTP FELVNALQGL CLGGGSVGEE EVSDKSPTSM 180 MDGAVDVERF MLPKSISVRS NGYLKMMSTQ AAAASRRGEK TPGPTRPGNA SQLSGEVNVQ 240 QKVYVQGGKE EEEPLELEVY NQGMFKTELC NKWQDTGACP YGDHCQFAHG IEELRPVIRH 300 PCYKTEVCRM VLAGDVCPYG HRCHFRHALT EQEKFMSHLK PRTR

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MNFTQLLFSG VLVRYHCIFN RFLLFQASVL SSQMLNYNGS TVYGDLAAKQ PNDHQSNGVY  60
SSSTTSSSAA AATFFSFYHP RLLMQQHQDM INRHSLCLTR LHEAAKENEA LRQENTALRF  120
VNRNLNKQLS ALIQASVQNH FASSDYSTTP FELVNALQGL CLGGGSVGEE EVSDKSPTSM  180
MDGAVDVERF MLPKSISVRS NGYLKMMSTQ AAAASRRGEK TPGPTRPGNA SQLSGEVNVQ  240
QKVYVQGGKE EEEPLELEVY NQGMFKTELC NKWQDTGACP YGDHCQFAHG IEELRPVIRH  300
PCYKTEVCRM VLAGDVCPYG HRCHFRHALT EQEKFMSHLK PRTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	1e-88	C3H family protein