PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022734182.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 733aa MW: 81742.5 Da PI: 5.7866

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022734182.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.5e-07	132	154	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp XP_022734182.1 132 VPCIFFQK-GLCLKGDRCAFLHGP 154 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence
MVAVTQQQQQ QMQAAVAGAA KTSADEEALK RNTDCVYFLA SPLTCKKGSE CEYRHSEYAR 60 VNPRDCFFWL NGNCMNPKCG FRHPPLDGLL GTQVAAPAGS TTSSSHMAAT PTPASHTPYN 120 QGVSYNSRKQ AVPCIFFQKG LCLKGDRCAF LHGPTTSNKG PQPTATITAT EPNSLKKAFG 180 ALETSQLQKF PPTNMSKTVG VPPEGKPTRK VDAASARSGS ATERSVPHLA GLDEELPRHK 240 ATNITSVVNG SFMGRSNHLH HLNVSDELSF HAVKETDEFL RESSPGFDVL VDDELRDSNF 300 FHDEDRYGGT RGHEGRNVNE YDIGHSANYD AMADVDREMF HDGQGYDSLD HVHGNYQWDQ 360 QRASSERISL GPSNLERRGY SRADNPDHVE ESDLRHRLSK HRRANGLRSV VSQNHTLENH 420 EGEENYPGSL RDSYHLPPHE SSLRNHLQGR IKLPGRSLVN ATNLHSERET ERGRNWGRLS 480 PGKPQTSSYQ GRLRDRIKGR LEGEYNNKEG RSFGGPRIRR EIMDEKNADF AGPKSLAELK 540 VGKNTDNKEH LSLGKRKSIE DLQQTRGDIS FEGPMPLSEI LKRKRQSEAA TSESGIVFVS 600 KEDVNQKQSK ESLIDNSTNA LISLTPEETN RKEESKSTTA DIGTTEVARG ESSQLLNIHE 660 HESEHGIIAD ERMGDHELEA DDRRDGDYYY EQGDEGEYNY EEGENVDPEE EYIEDEDGED 720 GDDFAKKLGV MFS

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence

MVAVTQQQQQ QMQAAVAGAA KTSADEEALK RNTDCVYFLA SPLTCKKGSE CEYRHSEYAR  60
VNPRDCFFWL NGNCMNPKCG FRHPPLDGLL GTQVAAPAGS TTSSSHMAAT PTPASHTPYN  120
QGVSYNSRKQ AVPCIFFQKG LCLKGDRCAF LHGPTTSNKG PQPTATITAT EPNSLKKAFG  180
ALETSQLQKF PPTNMSKTVG VPPEGKPTRK VDAASARSGS ATERSVPHLA GLDEELPRHK  240
ATNITSVVNG SFMGRSNHLH HLNVSDELSF HAVKETDEFL RESSPGFDVL VDDELRDSNF  300
FHDEDRYGGT RGHEGRNVNE YDIGHSANYD AMADVDREMF HDGQGYDSLD HVHGNYQWDQ  360
QRASSERISL GPSNLERRGY SRADNPDHVE ESDLRHRLSK HRRANGLRSV VSQNHTLENH  420
EGEENYPGSL RDSYHLPPHE SSLRNHLQGR IKLPGRSLVN ATNLHSERET ERGRNWGRLS  480
PGKPQTSSYQ GRLRDRIKGR LEGEYNNKEG RSFGGPRIRR EIMDEKNADF AGPKSLAELK  540
VGKNTDNKEH LSLGKRKSIE DLQQTRGDIS FEGPMPLSEI LKRKRQSEAA TSESGIVFVS  600
KEDVNQKQSK ESLIDNSTNA LISLTPEETN RKEESKSTTA DIGTTEVARG ESSQLLNIHE  660
HESEHGIIAD ERMGDHELEA DDRRDGDYYY EQGDEGEYNY EEGENVDPEE EYIEDEDGED  720
GDDFAKKLGV MFS