PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022731959.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 342aa MW: 38058.5 Da PI: 7.4398

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022731959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.9e-07	83	107	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f+ GtC+ G+ C+FaHg XP_022731959.1 83 FKTRMCAKFRL-GTCRNGEGCNFAHG 107 69*******.***********8 PP
2	zf-CCCH	27.9	4.2e-09	144	166	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yGdrC+F H XP_022731959.1 144 MKLCKKFYNGEQCPYGDRCNFLH 166 689****66********** PP
3	zf-CCCH	43.3	6e-14	229	255	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++Gd+C+FaHg+ XP_022731959.1 229 WKTKLCTKWETTGQCPFGDKCHFAHGQ 255 8************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MRPPPSNCAG SDAIGIWPEF SMNDGQFDPH SEFEQQQQQQ PPFKRPRHSE DSQSNVVQCT 60 PTNSRAPMPL NPSVNRGTSN IFFKTRMCAK FRLGTCRNGE GCNFAHGIED LRQPPPNWQE 120 LIGGREEERP SGNWDDDQKI IHRMKLCKKF YNGEQCPYGD RCNFLHEDPS KFRDDMGRLR 180 ESSAIGIGTT ALPAGHGTAS DQSEGNRPVN STGSDASRGN MKPVYPVYWK TKLCTKWETT 240 GQCPFGDKCH FAHGQAELHG IGGLVDGDFG NTGFGLTRIG SISTKIPAND PSAVTASVPL 300 NEEAQAKKCL FKWKGPRKIN RIYGDWIDDM PLLHNFPSQV ES

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MRPPPSNCAG SDAIGIWPEF SMNDGQFDPH SEFEQQQQQQ PPFKRPRHSE DSQSNVVQCT  60
PTNSRAPMPL NPSVNRGTSN IFFKTRMCAK FRLGTCRNGE GCNFAHGIED LRQPPPNWQE  120
LIGGREEERP SGNWDDDQKI IHRMKLCKKF YNGEQCPYGD RCNFLHEDPS KFRDDMGRLR  180
ESSAIGIGTT ALPAGHGTAS DQSEGNRPVN STGSDASRGN MKPVYPVYWK TKLCTKWETT  240
GQCPFGDKCH FAHGQAELHG IGGLVDGDFG NTGFGLTRIG SISTKIPAND PSAVTASVPL  300
NEEAQAKKCL FKWKGPRKIN RIYGDWIDDM PLLHNFPSQV ES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-104	C3H family protein