PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022731936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | HB-PHD | ||||||||
Protein Properties | Length: 720aa MW: 80950.1 Da PI: 9.4388 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.9 | 1.1e-10 | 495 | 539 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + +e L ++F++n ps+ +e L+k+lgL+ ++V WF+N R+ XP_022731936.1 495 PAAVEKLRQVFAENELPSRVIKENLSKELGLEPEKVNKWFKNARY 539 667899*************************************97 PP | |||||||
2 | PHD | 35.4 | 2.5e-12 | 232 | 287 | 1 | 51 |
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ d+ ++++vlCd +C+ +fH+kCl+++l++e++p g w+C+ C++k XP_022731936.1 232 FCAKCKLRDAfpDNDIVLCDgTCNCAFHQKCLDPPLDTENIPPGdqGWFCKFCECK 287 699999944455********56********************9999*******985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence |
MRGSGKKLID YESAKPSSSK REAGSKPIAA LKLKKRSKIS HGRVRKPKHH VKKVGSTLLK 60 RKVTASISKR TASDVSSSRK VGGETNKKVS SKKLDPSKLG GKNASFGSLE ENGKKDNGDV 120 GIKKLSKKKK KGQKDKVELD EASRLQGRTR YLLIKMKLEQ SLIDAYSGEG WKGQSREKIR 180 PEKELQRAKK QILKCKLGIR EAIRQLDSLS SVGSIEGSVI APDGSVYHEH IFCAKCKLRD 240 AFPDNDIVLC DGTCNCAFHQ KCLDPPLDTE NIPPGDQGWF CKFCECKMEI IEAMNAHIGT 300 NFSVDSHWQD IFKDEAAFPD DAIASLNPEE DWPSDDSEDD DYDPDRRENS CRIGGTATDG 360 DESEDTDSSI SLSWSVDGED FSGSGRCENH DSGADSSETS DGEIICGRRR RRAVDYKKLY 420 DEMFGKDAPT FEQVSEDEDW GPGKRKRREK ESDAASTLMT LYESETKFIN ADATEMIRQL 480 PSDLKSRRPF FRIPPAAVEK LRQVFAENEL PSRVIKENLS KELGLEPEKV NKWFKNARYL 540 ALKSRKVEGA DHLQSSSPRV SKEPGMEAPE RKDPDIMALE DMLEPTLLHT PKILKKKVRK 600 SPNSKLLDTS LERSPHNGLS VVSPTNSNKV GKELSDDLIL KKLLNVKKKR EKKRVSIIVG 660 GGLQEFELEM ERLCRAKVRL ENMKQTLLRL ETSKARKLNK KQLHEESFIY IPIAELKEKV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 157 | KKKKKGQKDKVELDEASRLQGRTRYLLIKMK |
2 | 128 | 158 | KKKKKGQKDKVELDEASRLQGRTRYLLIKMK |
3 | 445 | 450 | RKRREK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 1e-163 | HB-PHD family protein |