PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022730117.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 299aa MW: 31365.6 Da PI: 9.5944 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.3 | 9.8e-07 | 39 | 62 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H XP_022730117.1 39 KSKPCTKFFSTSGCPFGESCHFLH 62 7789******************** PP | |||||||
2 | zf-CCCH | 27.7 | 4.7e-09 | 104 | 129 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd+C+FaHg+ XP_022730117.1 104 KTRLCNKFNTPEGCKFGDKCHFAHGE 129 8***********************96 PP | |||||||
3 | zf-CCCH | 36.7 | 7.2e-12 | 266 | 290 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f++ G C +GdrC+FaHg XP_022730117.1 266 FKTKLCENFSK-GSCTFGDRCHFAHG 290 69*********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence |
MEFGGGRKRG RPESALNGNG GFKKSKQEME SFPTGIGSKS KPCTKFFSTS GCPFGESCHF 60 LHYVPGGIKA VSQMLGSNPT IPAAARSSVV PPSFPDGSSP PAVKTRLCNK FNTPEGCKFG 120 DKCHFAHGEW ELGKPTGPAY EDPRAMGSMP GRMVGRMEPT SQGLGAAASF GASATAKISI 180 DASLAGAIIG KNGVNSKHIC RVTGAKLSIR ENESDPSSRN IELEGTFDQI KQASAMVREL 240 ILNVGSASGT SMKNPAMSGS GSANNFKTKL CENFSKGSCT FGDRCHFAHG AEELRKPGM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 3e-51 | C3H family protein |