PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022729962.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

CO-like

Protein Properties

Length: 366aa MW: 40629.6 Da PI: 6.716

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022729962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.6	4.5e-07	20	62	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Ht 38 + C+++++ + +fC+ ++ ++C +C + +H+g H+ XP_022729962.1 20 KACDTCKSTAAAIFCRADSAFMCLNCDSRIHSGnnklssscHE 62 57****99*******************876666666665 PP
2	zf-B_box	25.3	3.2e-08	64	109	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +++ ++ C+ + lC +C +H+ H++vp+ XP_022729962.1 64 IWMCEVCKQAPAAVTCKADAAALCITCDADIHSAnplarrHERVPI 109 589****************************6689999999997 PP
3	CCT	64.1	4.1e-22	292	335	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+e rk+RkFeK+irY+sRKa+AesRpR+KGrF+k++ XP_022729962.1 292 REARVLRYRERRKNRKFEKTIRYASRKAYAESRPRIKGRFTKRT 335 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MGIEIASVKG ITGAWGMAAK ACDTCKSTAA AIFCRADSAF MCLNCDSRIH SGNNKLSSSC 60 HERIWMCEVC KQAPAAVTCK ADAAALCITC DADIHSANPL ARRHERVPIE PFFDSTDFIL 120 KSSPFSFLVP TDHNGTNCQQ EDVEPGSWSL PNPNLNTKLT VETNEAETGD LFFYEMDPSI 180 DFEYRNSSQQ HHNAVMDSVV PVQTNPAIIP VIKNENCFDI DFCRSKLHTF SYQTQSLSHS 240 VSSSSLEVGI VPDENSLSNI SYPFGQAMTD PSGPISATTT KNQASQVGGI DREARVLRYR 300 ERRKNRKFEK TIRYASRKAY AESRPRIKGR FTKRTEMDND DHMFNSRSAT AATFMSDTHY 360 VIVPSI

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MGIEIASVKG ITGAWGMAAK ACDTCKSTAA AIFCRADSAF MCLNCDSRIH SGNNKLSSSC  60
HERIWMCEVC KQAPAAVTCK ADAAALCITC DADIHSANPL ARRHERVPIE PFFDSTDFIL  120
KSSPFSFLVP TDHNGTNCQQ EDVEPGSWSL PNPNLNTKLT VETNEAETGD LFFYEMDPSI  180
DFEYRNSSQQ HHNAVMDSVV PVQTNPAIIP VIKNENCFDI DFCRSKLHTF SYQTQSLSHS  240
VSSSSLEVGI VPDENSLSNI SYPFGQAMTD PSGPISATTT KNQASQVGGI DREARVLRYR  300
ERRKNRKFEK TIRYASRKAY AESRPRIKGR FTKRTEMDND DHMFNSRSAT AATFMSDTHY  360
VIVPSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-109	CO-like family protein