PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022729433.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 476aa MW: 52943.4 Da PI: 4.8162

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022729433.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.7	3.5e-12	136	158	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G++CkF+H+ XP_022729433.1 136 EDCAYYMKTGLCKFGPNCKFNHP 158 89********************8 PP
2	zf-CCCH	30	8.9e-10	183	206	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++rtG Ck+G C+++H++ XP_022729433.1 183 TECKYYLRTGGCKFGKACRYNHSR 206 58********************95 PP
3	zf-CCCH	39.4	9.8e-13	227	251	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ XP_022729433.1 227 GEKECPYYMRNGSCKYGANCRFNHP 251 6789********************9 PP
4	zf-CCCH	26.8	8.9e-09	363	389	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++Ck++H++ XP_022729433.1 363 PGQPECSYFLKTGDCKFKSNCKYHHPK 389 5789*********************96 PP
5	zf-CCCH	35.2	2.1e-11	413	435	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++r+G+Ck+G+ CkF H++ XP_022729433.1 413 ICSHYSRYGICKFGPACKFDHSM 435 8********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MSQSEETPIS DTTPTYSALN VGFHSPDPGP ILDIDASSSD LNHWENEHNE SNFQRQLQDL 60 NLKEKEEEDA EVKEEEEEVE NKDDGERESD ADDNYADADG GGDNEDEEEK NEDESDDENV 120 KRHERSSHYP VRPEAEDCAY YMKTGLCKFG PNCKFNHPIR RKNQAVKEKV KEKDELTKKS 180 TQTECKYYLR TGGCKFGKAC RYNHSRAKSL VVPILELNFL GLPIRQGEKE CPYYMRNGSC 240 KYGANCRFNH PDPTAAGACD PPSAYSNGGS VSPQAAPQVN MTSWSSPRTL NETAAYMPIV 300 FSPTQGVPPP NPEWNGYQTT VYPPSERSLH PTPAFVISNP STDTTVYAPL PPQMVVDEFP 360 FRPGQPECSY FLKTGDCKFK SNCKYHHPKD RVPKPAPCAL SDKGLPLRPD QIICSHYSRY 420 GICKFGPACK FDHSMQAVPS EVSGLDQPPP ISHSTATEQT VIAGSNGTDA AVQQPV

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MSQSEETPIS DTTPTYSALN VGFHSPDPGP ILDIDASSSD LNHWENEHNE SNFQRQLQDL  60
NLKEKEEEDA EVKEEEEEVE NKDDGERESD ADDNYADADG GGDNEDEEEK NEDESDDENV  120
KRHERSSHYP VRPEAEDCAY YMKTGLCKFG PNCKFNHPIR RKNQAVKEKV KEKDELTKKS  180
TQTECKYYLR TGGCKFGKAC RYNHSRAKSL VVPILELNFL GLPIRQGEKE CPYYMRNGSC  240
KYGANCRFNH PDPTAAGACD PPSAYSNGGS VSPQAAPQVN MTSWSSPRTL NETAAYMPIV  300
FSPTQGVPPP NPEWNGYQTT VYPPSERSLH PTPAFVISNP STDTTVYAPL PPQMVVDEFP  360
FRPGQPECSY FLKTGDCKFK SNCKYHHPKD RVPKPAPCAL SDKGLPLRPD QIICSHYSRY  420
GICKFGPACK FDHSMQAVPS EVSGLDQPPP ISHSTATEQT VIAGSNGTDA AVQQPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-135	C3H family protein