PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022728549.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 116aa MW: 13626.5 Da PI: 10.6892 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.7 | 4.7e-16 | 29 | 59 | 2 | 32 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCd 32 + e+ks+rqvtfskRr g++ KA+ELS+LC+ XP_022728549.1 29 KLEDKSKRQVTFSKRRRGLFNKAKELSTLCG 59 679***************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence |
MEDNALISNA TEAKKTRRSR GRQRIEIKKL EDKSKRQVTF SKRRRGLFNK AKELSTLCGG 60 RKARVEELSI QKSTCLWHYV ADQELNKAQF LQQLMVGGNY DWCRNSDNFT LVEHRH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-14 | M-type_MADS family protein |