PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022728029.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

M-type_MADS

Protein Properties

Length: 373aa MW: 42162.5 Da PI: 5.7884

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022728029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75.6	3.7e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr+gilKKA+ELS+LCd+++ +++fs+tgk XP_022728029.1 9 KRLESYSNRQVTYSKRRTGILKKAKELSILCDIDIVLLMFSPTGK 53 689****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IDIVLLMFSP TGKPTLFHGE 60 RSNIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLCAT QSVEEMTNEV 120 SVLQAQLTEV QKRLSYWSNP DKIDNVEHLR QMEDSLRESI ECIRIHKENY GKHHLMSLEC 180 NSQFQNGIPL PMMIGGTQEA QPVTWLPNNE NQHMLLHNEP NFLPHQDTEC SADGSLAGYS 240 GFFVSGKQTE IGSSGQVDNV VQESNALNEL GSNACLSVEL GEQYFYPPYS ASNLQDNEKL 300 RPEMEANLQG NPAVFQVINN FEIPRPMYNS GHQAWVSSSG PCSIAMFDGN SYQQQTDSTF 360 MNQTPPSGQC HNL

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IDIVLLMFSP TGKPTLFHGE  60
RSNIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLCAT QSVEEMTNEV  120
SVLQAQLTEV QKRLSYWSNP DKIDNVEHLR QMEDSLRESI ECIRIHKENY GKHHLMSLEC  180
NSQFQNGIPL PMMIGGTQEA QPVTWLPNNE NQHMLLHNEP NFLPHQDTEC SADGSLAGYS  240
GFFVSGKQTE IGSSGQVDNV VQESNALNEL GSNACLSVEL GEQYFYPPYS ASNLQDNEKL  300
RPEMEANLQG NPAVFQVINN FEIPRPMYNS GHQAWVSSSG PCSIAMFDGN SYQQQTDSTF  360
MNQTPPSGQC HNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-113	M-type_MADS family protein