PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022727988.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family C3H
Protein Properties Length: 364aa    MW: 39563.7 Da    PI: 8.9161
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022727988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.1e-122650327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C +f++tGtCkyG++Ck++H++
  XP_022727988.1 26 QPDCGYFLKTGTCKYGSTCKYHHPK 50
                    789********************96 PP

2zf-CCCH38.81.6e-127295427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    + C++++rtG Ck+G  CkF+H++
  XP_022727988.1 72 KSCPYYMRTGACKFGVACKFHHPQ 95
                    66********************97 PP

3zf-CCCH39.97.2e-13216241227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+++ tGtCkyG+ Ck++H++
  XP_022727988.1 216 DQPECRYYMNTGTCKYGSDCKYHHPK 241
                     689*********************96 PP

4zf-CCCH31.62.8e-10262286226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C+ +  +G CkyG++C+F H+
  XP_022727988.1 262 GQAVCSSYNMNGLCKYGPTCRFDHP 286
                     7899********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
MLYRINPLIT VKGGQYREEL PERVGQPDCG YFLKTGTCKY GSTCKYHHPK DRNGAGPVTL  60
NVLGLPMRQD EKSCPYYMRT GACKFGVACK FHHPQPASPA AGLPVNGSVG SSILPQSGLP  120
YAGGLPTWPL SRAPYGRGNP HLPGSQSYMP VVVSPSQSII PAHGWSTYMG NMSPISPTGI  180
LGSNFVSYSM NPAESGSSGR LLLSSTFGSN FPERPDQPEC RYYMNTGTCK YGSDCKYHHP  240
KERIANSAVN GISPLGLPSR PGQAVCSSYN MNGLCKYGPT CRFDHPYVGY PYNYGLSLPL  300
YVFDASLLTY QRMPPAAHLS EAPLPSKLPD WARNTNSVSK KHHNLETKNS DDPPEQAASK  360
TSND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.23e-91C3H family protein