PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022727988.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 364aa MW: 39563.7 Da PI: 8.9161 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.1 | 5.1e-12 | 26 | 50 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_022727988.1 26 QPDCGYFLKTGTCKYGSTCKYHHPK 50 789********************96 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 72 | 95 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ XP_022727988.1 72 KSCPYYMRTGACKFGVACKFHHPQ 95 66********************97 PP | |||||||
3 | zf-CCCH | 39.9 | 7.2e-13 | 216 | 241 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ Ck++H++ XP_022727988.1 216 DQPECRYYMNTGTCKYGSDCKYHHPK 241 689*********************96 PP | |||||||
4 | zf-CCCH | 31.6 | 2.8e-10 | 262 | 286 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ + +G CkyG++C+F H+ XP_022727988.1 262 GQAVCSSYNMNGLCKYGPTCRFDHP 286 7899********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence |
MLYRINPLIT VKGGQYREEL PERVGQPDCG YFLKTGTCKY GSTCKYHHPK DRNGAGPVTL 60 NVLGLPMRQD EKSCPYYMRT GACKFGVACK FHHPQPASPA AGLPVNGSVG SSILPQSGLP 120 YAGGLPTWPL SRAPYGRGNP HLPGSQSYMP VVVSPSQSII PAHGWSTYMG NMSPISPTGI 180 LGSNFVSYSM NPAESGSSGR LLLSSTFGSN FPERPDQPEC RYYMNTGTCK YGSDCKYHHP 240 KERIANSAVN GISPLGLPSR PGQAVCSSYN MNGLCKYGPT CRFDHPYVGY PYNYGLSLPL 300 YVFDASLLTY QRMPPAAHLS EAPLPSKLPD WARNTNSVSK KHHNLETKNS DDPPEQAASK 360 TSND |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 3e-91 | C3H family protein |