PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022727987.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 412aa MW: 44765.9 Da PI: 8.1549

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022727987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.5e-12	30	55	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++rtG C yG++C+F+H+ XP_022727987.1 30 PGEPDCSYYLRTGLCGYGSNCRFNHP 55 5789*********************9 PP
2	zf-CCCH	36.9	6e-12	74	98	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_022727987.1 74 QPDCGYFLKTGTCKYGSTCKYHHPK 98 789********************96 PP
3	zf-CCCH	38.6	1.8e-12	120	143	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ XP_022727987.1 120 KSCPYYMRTGACKFGVACKFHHPQ 143 66********************97 PP
4	zf-CCCH	39.7	8.4e-13	264	289	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ Ck++H++ XP_022727987.1 264 DQPECRYYMNTGTCKYGSDCKYHHPK 289 689*********************96 PP
5	zf-CCCH	31.4	3.3e-10	310	334	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ + +G CkyG++C+F H+ XP_022727987.1 310 GQAVCSSYNMNGLCKYGPTCRFDHP 334 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MPENREVQNN AVSNQSADNS EESAAYPDRP GEPDCSYYLR TGLCGYGSNC RFNHPTYASQ 60 GGQYREELPE RVGQPDCGYF LKTGTCKYGS TCKYHHPKDR NGAGPVTLNV LGLPMRQDEK 120 SCPYYMRTGA CKFGVACKFH HPQPASPAAG LPVNGSVGSS ILPQSGLPYA GGLPTWPLSR 180 APYGRGNPHL PGSQSYMPVV VSPSQSIIPA HGWSTYMGNM SPISPTGILG SNFVSYSMNP 240 AESGSSGRLL LSSTFGSNFP ERPDQPECRY YMNTGTCKYG SDCKYHHPKE RIANSAVNGI 300 SPLGLPSRPG QAVCSSYNMN GLCKYGPTCR FDHPYVGYPY NYGLSLPLYV FDASLLTYQR 360 MPPAAHLSEA PLPSKLPDWA RNTNSVSKKH HNLETKNSDD PPEQAASKTS ND

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MPENREVQNN AVSNQSADNS EESAAYPDRP GEPDCSYYLR TGLCGYGSNC RFNHPTYASQ  60
GGQYREELPE RVGQPDCGYF LKTGTCKYGS TCKYHHPKDR NGAGPVTLNV LGLPMRQDEK  120
SCPYYMRTGA CKFGVACKFH HPQPASPAAG LPVNGSVGSS ILPQSGLPYA GGLPTWPLSR  180
APYGRGNPHL PGSQSYMPVV VSPSQSIIPA HGWSTYMGNM SPISPTGILG SNFVSYSMNP  240
AESGSSGRLL LSSTFGSNFP ERPDQPECRY YMNTGTCKYG SDCKYHHPKE RIANSAVNGI  300
SPLGLPSRPG QAVCSSYNMN GLCKYGPTCR FDHPYVGYPY NYGLSLPLYV FDASLLTYQR  360
MPPAAHLSEA PLPSKLPDWA RNTNSVSKKH HNLETKNSDD PPEQAASKTS ND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-114	C3H family protein