PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022727938.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

CO-like

Protein Properties

Length: 377aa MW: 41655.3 Da PI: 5.4357

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022727938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.2	2.6e-06	17	58	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 er+C+++++ + +C+ ++ +lC+ C H H+ XP_022727938.1 17 ERVCDTCQSAACTVYCRADSAYLCAGCDARVHAAnrvasrHE 58 689****99***************99995555666665 PP
2	zf-B_box	29.7	1.4e-09	60	105	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC +C e+H+ H +vp+ XP_022727938.1 60 VWVCEACERAPAAFLCRADAASLCTTCDAEIHSAnplarrHHRVPI 105 689*****************************66899999877775 PP
3	CCT	70.4	4.7e-24	308	351	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_022727938.1 308 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 351 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MLKQETSDVA GGGNNWERVC DTCQSAACTV YCRADSAYLC AGCDARVHAA NRVASRHERV 60 WVCEACERAP AAFLCRADAA SLCTTCDAEI HSANPLARRH HRVPILPISG CLYGPLATDQ 120 GGRKMASAAE TEDGFMATEG DETIAEEDED EAASWLLLNP GKNNNQNNGF LLGGEVDEYL 180 DLVEYNSSIE NQFIDQYNQQ QQHYGVPHKS YGGDSVVPVQ SGEAKDHLQQ QQHQSFQYGL 240 DYDSSKAAYS YNGSISHSVS VSSVDVGVVP ESTISDISIS HTRPPKGTID LFSGPPIQMP 300 PQLTPMDREA RVLRYREKKK TRKFEKTIRY ASRKAYAETR PRIKGRFAKR TDVEVEVDQM 360 FSTTLMTETG YGIVPSF

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MLKQETSDVA GGGNNWERVC DTCQSAACTV YCRADSAYLC AGCDARVHAA NRVASRHERV  60
WVCEACERAP AAFLCRADAA SLCTTCDAEI HSANPLARRH HRVPILPISG CLYGPLATDQ  120
GGRKMASAAE TEDGFMATEG DETIAEEDED EAASWLLLNP GKNNNQNNGF LLGGEVDEYL  180
DLVEYNSSIE NQFIDQYNQQ QQHYGVPHKS YGGDSVVPVQ SGEAKDHLQQ QQHQSFQYGL  240
DYDSSKAAYS YNGSISHSVS VSSVDVGVVP ESTISDISIS HTRPPKGTID LFSGPPIQMP  300
PQLTPMDREA RVLRYREKKK TRKFEKTIRY ASRKAYAETR PRIKGRFAKR TDVEVEVDQM  360
FSTTLMTETG YGIVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-110	CO-like family protein