PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022727564.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

CO-like

Protein Properties

Length: 415aa MW: 45028.9 Da PI: 4.7486

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022727564.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.2	5.2e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ XP_022727564.1 4 NCDFCGDQRSVVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 6*****************************65677777766 PP
2	zf-B_box	18.9	3.1e-06	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C + ++ lC +C +H g H++++ XP_022727564.1 46 LLCDRCNSQPAFVRCAEERVSLCLNCDWMGH-GtstsnstHKRQT 89 57*****************************.5578888888766 PP
3	CCT	62.7	1.2e-21	358	401	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ XP_022727564.1 358 RSNAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 401 899**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MGYNCDFCGD QRSVVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCDR CNSQPAFVRC 60 AEERVSLCLN CDWMGHGTST SNSTHKRQTI NCYTGCPSSA ELSSIWPFLL QSSSPGESTC 120 EQELGLMSIT ENIERTSWGP TENTISQNGT GVAEVYDDHN VDKGSGWGGS SSIPELISAP 180 QALDLPAGLT DTLLPKSCCP QTKCPALCED DLYDDFNMDE VDLNLENYEE LFGVTLNHSE 240 ELFENGGIDS LFGTKDMSAA DSNCQGAVAA EGSSVGLINA IQPASSNAAS ADSIMSNKTD 300 SFLCFTARQA HSSLSFSGLT GESSAGDYQD CGASSMLLMG EPPWCPPCTE SSFPSATRSN 360 AVMRYKEKKK TRKFEKRVRY ASRKARADVR KRVKGRFVKA GDAYDYDPLN QTSTC

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MGYNCDFCGD QRSVVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCDR CNSQPAFVRC  60
AEERVSLCLN CDWMGHGTST SNSTHKRQTI NCYTGCPSSA ELSSIWPFLL QSSSPGESTC  120
EQELGLMSIT ENIERTSWGP TENTISQNGT GVAEVYDDHN VDKGSGWGGS SSIPELISAP  180
QALDLPAGLT DTLLPKSCCP QTKCPALCED DLYDDFNMDE VDLNLENYEE LFGVTLNHSE  240
ELFENGGIDS LFGTKDMSAA DSNCQGAVAA EGSSVGLINA IQPASSNAAS ADSIMSNKTD  300
SFLCFTARQA HSSLSFSGLT GESSAGDYQD CGASSMLLMG EPPWCPPCTE SSFPSATRSN  360
AVMRYKEKKK TRKFEKRVRY ASRKARADVR KRVKGRFVKA GDAYDYDPLN QTSTC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-128	CO-like family protein