PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022727103.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 725aa MW: 79607.7 Da PI: 5.7373

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022727103.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.4	9.3e-07	139	161	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C Gd+C F Hgp XP_022727103.1 139 VPCIFFQK-GLCLKGDKCAFLHGP 161 79****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence
MVAATQQQQQ QQKQAAEAAA AATVSGATKT SAEEEALKRN TDCVYFLASP LTCKKGSECE 60 YRHSEYARVN PRDCYYWLNG SCLNPKCGFR HPPLDSLLGT QVAAPAGSSL HTAATPTPAS 120 HTPYSQGASH SSSTSKQGVP CIFFQKGLCL KGDKCAFLHG PTTSNEAPQP ATTTTASKPH 180 SLKRGFGALE TSQLQKFPPT NVAKTVGVPQ RKPAPKVEAP LARTGTGPER SVPRLAGLDE 240 ELPRHKVNTT SVINGGSVGS SHRLHQAHAS DELSFHGGKD TDEFLRESSP GFDVLVDDEL 300 RDSDFYHGED QYGGTRGQEG RNVSEYDISH SATFDAMTDV DRERFHDARG CDSFDHVQGN 360 YGWDQQRASS ERISLGPSAL ETRGYSRAGN PDHIEESDLR HRLSKRRRVS GVRSVLSRDH 420 ALENHEGERN YQGSRRDSDH LPPHESSFSS HLQGRIKLPG RSLVNGTDLR SEIEIERGQN 480 WGHLSPGKPQ TYSHQGRLRD RIKGRIEGEF NNKEGQNFGV SRIRREVMDE RNADFAGPKS 540 LAELKVGKNT GNREHQSLGN RKSIGDYQQT EGDLSFKGPM TLSEILKRKR QSEAAASGSG 600 IAAVNKDVNQ KQSTNTVVSA APEEANIKEE SKSTTAGIET TEVTNGESSQ LCNISEHEAD 660 NGIIADETME DHELGADDQR DADYYYQGDE GEYNYEEDEN VDPEEEYNEE EDGDDFAKKL 720 GVIFS

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence

MVAATQQQQQ QQKQAAEAAA AATVSGATKT SAEEEALKRN TDCVYFLASP LTCKKGSECE  60
YRHSEYARVN PRDCYYWLNG SCLNPKCGFR HPPLDSLLGT QVAAPAGSSL HTAATPTPAS  120
HTPYSQGASH SSSTSKQGVP CIFFQKGLCL KGDKCAFLHG PTTSNEAPQP ATTTTASKPH  180
SLKRGFGALE TSQLQKFPPT NVAKTVGVPQ RKPAPKVEAP LARTGTGPER SVPRLAGLDE  240
ELPRHKVNTT SVINGGSVGS SHRLHQAHAS DELSFHGGKD TDEFLRESSP GFDVLVDDEL  300
RDSDFYHGED QYGGTRGQEG RNVSEYDISH SATFDAMTDV DRERFHDARG CDSFDHVQGN  360
YGWDQQRASS ERISLGPSAL ETRGYSRAGN PDHIEESDLR HRLSKRRRVS GVRSVLSRDH  420
ALENHEGERN YQGSRRDSDH LPPHESSFSS HLQGRIKLPG RSLVNGTDLR SEIEIERGQN  480
WGHLSPGKPQ TYSHQGRLRD RIKGRIEGEF NNKEGQNFGV SRIRREVMDE RNADFAGPKS  540
LAELKVGKNT GNREHQSLGN RKSIGDYQQT EGDLSFKGPM TLSEILKRKR QSEAAASGSG  600
IAAVNKDVNQ KQSTNTVVSA APEEANIKEE SKSTTAGIET TEVTNGESSQ LCNISEHEAD  660
NGIIADETME DHELGADDQR DADYYYQGDE GEYNYEEDEN VDPEEEYNEE EDGDDFAKKL  720
GVIFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	405	409	KRRRV