PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022726550.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 310aa MW: 34334.5 Da PI: 7.3127

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022726550.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.7	5.3e-15	231	256	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd C+FaHg XP_022726550.1 231 FKTELCNKWQETGACPYGDHCQFAHG 256 79***********************8 PP
2	zf-CCCH	18.7	3.1e-06	269	293	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ C+yG rC+F H XP_022726550.1 269 YKTEVCRMVLAGDVCPYGHRCHFRH 293 9********55********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MQNDNCSTVY GDLAAKQQND DQSDGVYSSS TTSSSAASAA ASLFALYHPR LLMQQHQDMI 60 NRHNLCLTRL REAAKEAEAL RQENTSLRSV NRDLNKQLSA LIQASVQNHF ASSDYNTTPF 120 DLVNALRGLC LSGGGVGEEE VSDESPTSVM EGAVDVERVM LPKSISVRSN GYLKMMNQAG 180 ASHRGKTRGP TRPGNASQLS GAVNVQQKVY VQGGKKEEEP LELEVYNQGM FKTELCNKWQ 240 ETGACPYGDH CQFAHGIEEL RPVIRHPRYK TEVCRMVLAG DVCPYGHRCH FRHALTEQEK 300 FMGHLKPSTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	5e-76	C3H family protein