PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022726112.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 27677.3 Da PI: 6.6313 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.6 | 1.2e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr+g+lKK +ELSvLCda++ +iifsstgk+ y+s XP_022726112.1 9 KRIENRTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 77.6 | 3.2e-26 | 73 | 170 | 3 | 99 |
K-box 3 kssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 k +g+ e+ + e+l++ela L+ke++ Lq + R++ Ged++s+ ++eL qLeq+Le+s++k+R++Knell +q+++l++ke++lqeen ++ + XP_022726112.1 73 KVTGTCiPEHDNREQLYNELAELRKETHHLQLSMRRYTGEDMSSIPIEELDQLEQELERSVNKVRDRKNELLQQQLDNLRRKERMLQEENSNMYR 167 555555567788999****************************************************************************9987 PP K-box 97 kle 99 ++ XP_022726112.1 168 WIQ 170 766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MGRGKIPIKR IENRTTRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFSS TGKMCQYCSE 60 PYRMEQIIER YQKVTGTCIP EHDNREQLYN ELAELRKETH HLQLSMRRYT GEDMSSIPIE 120 ELDQLEQELE RSVNKVRDRK NELLQQQLDN LRRKERMLQE ENSNMYRWIQ EHQAAIEYQQ 180 EGIEAKQVEH QQVLDQFPFY EEPSSVLQLA TIPQQFNSYQ LQLAQPNLQH SNV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 5e-89 | MIKC_MADS family protein |