PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022724642.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 569aa MW: 62048.3 Da PI: 9.1811 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022724642.1 90 FVCEICSKGFQRDQNLQLHRRGH 112 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00043 | 166 | 188 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_022724642.1 166 WKCDKCSKRYAVQSDWKAHSKTC 188 58*****************9998 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 569 aa Download sequence |
MMKDLLFQQR QQQQQALEEN MSNLTSASGE ASASSGNRTE AGTNYPQQYF STPPPRTQLV 60 KKKRNLPGNP DPDAEVIALS PKTLMATNRF VCEICSKGFQ RDQNLQLHRR GHNLPWKLKQ 120 RASKEVRKKV YVCPEPSCVH HDPSRALGDL TGIKKHFFRK HGEKTWKCDK CSKRYAVQSD 180 WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAITGANP LLSPHQPSPS 240 LSTSHINLQV PQFNPQDIQL QAFSLKKEQQ SFTTLRPEIP PWLASQPMLG AGRGPTQPID 300 LSFSSSSIFS TRLDHQEFTQ THHQDLTLNE NPNPNPSLGS TLPPYHPTTV PSPQLSATAL 360 LQKAAQMGAT MTCKAGSSSA PATTATAAAV ATSLMRPHQQ THVSADSAGN NSTTTASFGL 420 NLSSREELAV GSGFIHGLAP FGNHKPAAAN AGSGAPPSLL QDMMNSLSSA TRFDVTSFDD 480 AFGGILNTKN RGSFINESLS KTTTPTPTTN ATRNDNQSTG GSTQGEELTR DFLGLRAFSH 540 SDILNITGLN NCMNTSQEQP NQSQKTWQG |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 117 | 129 | KLKQRASKEVRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-114 | C2H2 family protein |