PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022724340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 682aa MW: 76384.6 Da PI: 7.516 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.8e-05 | 77 | 98 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H XP_022724340.1 77 KCDKCSREFCSPINYRRHIRVH 98 7********************6 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 682 aa Download sequence |
MPVAKLKAGN SAHVMKSEEP NDSLDTFIRQ AIGKESFLSF SRAGDNPVQW IQLLHALDQQ 60 DIPGWPLLTP LKVQMQKCDK CSREFCSPIN YRRHIRVHHR LKKLDKDSAK NRDLLAAFWD 120 KLSEDEAKEV ISFKDVSLEE VPGSSVIKSL TALLKRPGFS ALPLVCLRAG SALLDLVQAR 180 PSRFPVSSQE LFSILDDASE RTFLFGVAVS IQKYIFDGEA GKIGLETKNL VACTSFLVEQ 240 KLVKAWLADK DAEALRCQKL LVEEEEAAQK RQVELLERKK QKKLRQKEQK AKEQRQWEVE 300 EDKQNNDDSL EVNIPAETSS TLAAFDSDGQ NPVISTYQVL PSVEPIHISK PEEDVDYEIQ 360 MGFSNGYCDS GTSQNVESRM EQVGGHQRIV VTRWQTPPKS HKGVLNDFHA SQNSHRLKFG 420 GMNKHGTKRE RVAAMGNSNK MWSRKSKAVY DGKSLRIREE KQTTNQLDQN KNHEVLIGSI 480 SVMLGNCSYL EVNNLAEACH RCLAECQIPK KNNVQEKFSQ LDPVQGVTNR STIKFWRPVS 540 QREGQSSLPV QNGVKEFEVE VIAEKDGVQT FDESCLRLYA TDRNDGVVST NLSSTLEESV 600 QPGSLQFDSH VAKAFLARRW KEAIAGGHVT LVLSPNLEPP GCSEVENDSS EKWMDKAGAF 660 EASTGGAAKG KFRTMPEKVA KM |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 277 | 284 | ERKKQKKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25610.1 | 1e-149 | C2H2 family protein |