PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022724291.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family AP2
Protein Properties Length: 581aa    MW: 64314.4 Da    PI: 6.8255
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022724291.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.6e-15258317155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_022724291.1 258 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 317
                     78*******************655454478446*************************98 PP

2AP248.42.3e-15360411155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_022724291.1 360 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAEAYDIAAIKFRG 411
                     78****************988532...5************************998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    
MSNWLGFSLT PHLRIDESFG RQDHGGFSSV MPLRSDGSLC VVDPFRRSSN GAEDWRYENG  60
IRSANEEGPK LEDFLGCCYS NSPSEETKAY CQTQEDQNQN SISARINVNV APSYNGNGDM  120
ETGENFTNPS SLIQTYHFNG NPQTLMASDH NLQQCDPNPN HNQNNGMYHV PFESAASVSG  180
FKSWLRETPF SGGRTSGEAS NNCNFQSLSL TMSPSSQNGL VAIAPLELVE NRKRPVGRTL  240
AREPVPRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CRKEGQTRKG RQVYLGGYDK  300
EEKAARAYDL AALKYWGPTT HINFPLITYE KELEEMKNMT RQEFVAHLRR KSSGFSRGAS  360
VYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFTTQEEAAE AYDIAAIKFR GTSAVTNFDI  420
SRYDVKRICS SSTLIGGDLA KRSPKESASI ALEDYNSCNS STAAQPLLAI SSGEASDELA  480
GMVWSANSDD QQQHQSNNTN NDASLATSNS RNSSNPQSPK CSVGLASDQF GIGGDHSQGQ  540
GYLLQSPKYE DGNNGTENSN ENRLGNVGLV HQVPIFALWN E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-139AP2 family protein