PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022722605.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 314aa MW: 35395 Da PI: 6.4352 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.2e-07 | 198 | 223 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+ yG++CkF+H+ XP_022722605.1 198 YQPDICKDYKETGYRGYGESCKFMHD 223 67789********************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence |
MTDSSEPQYP GKRTQQFETE PQQSEQVCNF FRKPTKGKNI RKRTTNGDED SRNGTSLLHN 60 QKKDLKPDNM LCFSTGSSGS AAPTESNTES DKLIFQFKSL KEIQVQNDSR ATATLETETE 120 FTKDARAIHE KVLKRAEESF KGKNTSSGEE KLYKGMHGYV DHKAGFQREQ TGASEKAGGS 180 HRPIRASAHI SVSARFDYQP DICKDYKETG YRGYGESCKF MHDSGYYKSG WLLEKDLEEA 240 QKARKRNLAL GGDDDDDEAG VDQSDDDDDD SLPFACFICL QPFVDPVVTT CNHYFCEHCA 300 LKHHAKNKKC FVCN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-128 | C3H family protein |