PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022721923.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 473aa MW: 50012 Da PI: 8.408 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.7 | 6.9e-12 | 44 | 68 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG+C yG++C+F+H++ XP_022721923.1 44 EADCMYYLRTGFCGYGSKCRFNHPR 68 689********************96 PP | |||||||
2 | zf-CCCH | 40.1 | 5.9e-13 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f++rtGtCk+G++Ck++H++ XP_022721923.1 90 QPVCQFYMRTGTCKFGASCKYNHPK 114 689********************96 PP | |||||||
3 | zf-CCCH | 34.7 | 3.1e-11 | 136 | 159 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+++ +tG Ck+G++CkF+H+ XP_022721923.1 136 EKECSYYVKTGRCKFGATCKFHHP 159 689********************8 PP | |||||||
4 | zf-CCCH | 38.6 | 1.8e-12 | 296 | 322 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H+p XP_022721923.1 296 PGQPECHYYMKTGDCKYGSSCRYHHPP 322 5789*********************97 PP | |||||||
5 | zf-CCCH | 34.1 | 4.7e-11 | 344 | 368 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++++ G Ck+G+ CkF H++ XP_022721923.1 344 APPCTHYSQRGACKFGAACKFDHPM 368 689********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence |
MERGSDSDPE PEWTASGPET GLEEPVWRLG LGDGSESYPV RPNEADCMYY LRTGFCGYGS 60 KCRFNHPRDH ARVIGAGRGG VEEYPERVGQ PVCQFYMRTG TCKFGASCKY NHPKQGGGSV 120 NSVPLNYYGY PLRLGEKECS YYVKTGRCKF GATCKFHHPA PPAVQLPAPS LAPPVARLPT 180 PGPVPMSYPM VQSPSGRSSQ QYGVVMARPP LMPGSYGQAP YGPLMLSPGM VYVPSWNPYL 240 APVNPGTQSN VGSSSIFRVT PLSPSAPAYT GSYQPVPSSV GPSSSFQKEQ SFPERPGQPE 300 CHYYMKTGDC KYGSSCRYHH PPEVIAPKAD VILSPLGFPL RPGAPPCTHY SQRGACKFGA 360 ACKFDHPMGT FSYSPSASSL ADVPVAPCSV GSTVGTLAPS SSSSELRPEL LSGSSKDPAP 420 SIMSSSASAS SESVGSFFSK GTPVPQSSTQ QSTQSSAPST GSGSSSTKAH TSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-146 | C3H family protein |