PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022721314.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family C3H
Protein Properties Length: 942aa    MW: 103988 Da    PI: 8.5918
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022721314.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33.1e-09180201325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                     t lC++f++ G C++G++C+F H
  XP_022721314.1 180 TQLCKDFMA-GRCRRGSQCHFLH 201
                     78*******.************* PP

2zf-CCCH23.78.3e-08243262626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C ++++ G C++G++C+FaH+
  XP_022721314.1 243 CTNYLK-GNCRRGASCRFAHD 262
                     ******.*************5 PP

Sequence ? help Back to Top
Protein Sequence    Length: 942 aa     Download sequence    
MSRSRKRSSK WDSKEESQHS LENVRDSACP AKAGVSFHDR ESEHGSFSLE VGRNGNKWSV  60
AGASDAMKSK RGLPSRESLH GSRGGENDDK INVDCVKNWK TTAQLDGDET YSMKMSPGLD  120
DWRQQNHHHS PKSDWSRSRR SRSRSWSRSR SRSRSRSPVR GIRRQSGFSE RTRNRSGVST  180
QLCKDFMAGR CRRGSQCHFL HQDIQSREDG WDNRQRRVGA SNYIPRNDSK DYLTRSGRST  240
DFCTNYLKGN CRRGASCRFA HDGASDGFSR GSVSRERENN KRNRVKTPEQ DGEREAQRSS  300
DIPCKYFVAG NCRDGKYCRF SHHGQARAGP ERSLGDRGVW GQGSVSVDKL QDGAKLRGAD  360
ASFSVEKSWN APKRGDDNAS NEAEKPLASP KWSDVDASDD VDNSWTGSKW NDRGAYSGDT  420
KLSKDTNGKM AASGSRFSGW SMDERWQHDN DVSGKNSETN VHYKTVDIDK DEGIPRRIQN  480
SGVNMGVSEP KDSEELLGDM EMSPEWNYGI HSSVKKEHSY SSKSTAVDTS LPTNEKNVTE  540
EASGQACNGL AALQPISTEK SNFQQDHMMR ASSAVALPCD SNAVSRNASI SLIDVNFSTN  600
VLPMTSFDQP GPSSSSLPYS NLNAVGQSQV AIPSNEVNMK ATQNSLLFQE EKPSNKLNIL  660
DTNILHGNSG SQTTQNMVSN EQLTQLTNLS ASLAQLFGKG QVTSFSNCGG PVEPDSVPTV  720
QPGQDITFPK QYDPISDSIE PAKKQDTNTK PLGFSLHPVS QKNTADGKPE LSANRLLPSS  780
LVGGTNDGDY HNDQSSKSEP GFDSHKPNQL EPAASSEVTK ENGGVEETEK AEEENKNGLS  840
EKIDADDRTD EGKKSKDGKG IRAFKFALVE FVKDLLKPSW KEGQIGKEAY KNIVKKVVDK  900
VTATMQGTNI PQTPEKIDQY LSFSKPKLGK LVQAYVEKFQ KS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156RSRSRSRSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-18C3H family protein