PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022721314.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 942aa MW: 103988 Da PI: 8.5918 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.3 | 3.1e-09 | 180 | 201 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f++ G C++G++C+F H XP_022721314.1 180 TQLCKDFMA-GRCRRGSQCHFLH 201 78*******.************* PP | |||||||
2 | zf-CCCH | 23.7 | 8.3e-08 | 243 | 262 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C ++++ G C++G++C+FaH+ XP_022721314.1 243 CTNYLK-GNCRRGASCRFAHD 262 ******.*************5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 942 aa Download sequence |
MSRSRKRSSK WDSKEESQHS LENVRDSACP AKAGVSFHDR ESEHGSFSLE VGRNGNKWSV 60 AGASDAMKSK RGLPSRESLH GSRGGENDDK INVDCVKNWK TTAQLDGDET YSMKMSPGLD 120 DWRQQNHHHS PKSDWSRSRR SRSRSWSRSR SRSRSRSPVR GIRRQSGFSE RTRNRSGVST 180 QLCKDFMAGR CRRGSQCHFL HQDIQSREDG WDNRQRRVGA SNYIPRNDSK DYLTRSGRST 240 DFCTNYLKGN CRRGASCRFA HDGASDGFSR GSVSRERENN KRNRVKTPEQ DGEREAQRSS 300 DIPCKYFVAG NCRDGKYCRF SHHGQARAGP ERSLGDRGVW GQGSVSVDKL QDGAKLRGAD 360 ASFSVEKSWN APKRGDDNAS NEAEKPLASP KWSDVDASDD VDNSWTGSKW NDRGAYSGDT 420 KLSKDTNGKM AASGSRFSGW SMDERWQHDN DVSGKNSETN VHYKTVDIDK DEGIPRRIQN 480 SGVNMGVSEP KDSEELLGDM EMSPEWNYGI HSSVKKEHSY SSKSTAVDTS LPTNEKNVTE 540 EASGQACNGL AALQPISTEK SNFQQDHMMR ASSAVALPCD SNAVSRNASI SLIDVNFSTN 600 VLPMTSFDQP GPSSSSLPYS NLNAVGQSQV AIPSNEVNMK ATQNSLLFQE EKPSNKLNIL 660 DTNILHGNSG SQTTQNMVSN EQLTQLTNLS ASLAQLFGKG QVTSFSNCGG PVEPDSVPTV 720 QPGQDITFPK QYDPISDSIE PAKKQDTNTK PLGFSLHPVS QKNTADGKPE LSANRLLPSS 780 LVGGTNDGDY HNDQSSKSEP GFDSHKPNQL EPAASSEVTK ENGGVEETEK AEEENKNGLS 840 EKIDADDRTD EGKKSKDGKG IRAFKFALVE FVKDLLKPSW KEGQIGKEAY KNIVKKVVDK 900 VTATMQGTNI PQTPEKIDQY LSFSKPKLGK LVQAYVEKFQ KS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 156 | RSRSRSRSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-18 | C3H family protein |