PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022721311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 950aa MW: 104938 Da PI: 8.7706 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.3 | 3.1e-09 | 188 | 209 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f++ G C++G++C+F H XP_022721311.1 188 TQLCKDFMA-GRCRRGSQCHFLH 209 78*******.************* PP | |||||||
2 | zf-CCCH | 23.7 | 8.4e-08 | 251 | 270 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C ++++ G C++G++C+FaH+ XP_022721311.1 251 CTNYLK-GNCRRGASCRFAHD 270 ******.*************5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 950 aa Download sequence |
MSRSRKRSSK WDSKEESQHS LENVRDSACP AKAGVSFHDR ESEHGSFSLE VGRNGNKWSV 60 AGASDAMKSK RGLPSRESLH GSRGGENDDK INVDCVKNWK TTAQLDGDET YSMKMSPGLD 120 DWRQQNHHHS PKSDWSRSRS FTQRSRSRSR SRSWSRSRSR SRSRSPVRGI RRQSGFSERT 180 RNRSGVSTQL CKDFMAGRCR RGSQCHFLHQ DIQSREDGWD NRQRRVGASN YIPRNDSKDY 240 LTRSGRSTDF CTNYLKGNCR RGASCRFAHD GASDGFSRGS VSRERENNKR NRVKTPEQDG 300 EREAQRSSDI PCKYFVAGNC RDGKYCRFSH HGQARAGPER SLGDRGVWGQ GSVSVDKLQD 360 GAKLRGADAS FSVEKSWNAP KRGDDNASNE AEKPLASPKW SDVDASDDVD NSWTGSKWND 420 RGAYSGDTKL SKDTNGKMAA SGSRFSGWSM DERWQHDNDV SGKNSETNVH YKTVDIDKDE 480 GIPRRIQNSG VNMGVSEPKD SEELLGDMEM SPEWNYGIHS SVKKEHSYSS KSTAVDTSLP 540 TNEKNVTEEA SGQACNGLAA LQPISTEKSN FQQDHMMRAS SAVALPCDSN AVSRNASISL 600 IDVNFSTNVL PMTSFDQPGP SSSSLPYSNL NAVGQSQVAI PSNEVNMKAT QNSLLFQEEK 660 PSNKLNILDT NILHGNSGSQ TTQNMVSNEQ LTQLTNLSAS LAQLFGKGQV TSFSNCGGPV 720 EPDSVPTVQP GQDITFPKQY DPISDSIEPA KKQDTNTKPL GFSLHPVSQK NTADGKPELS 780 ANRLLPSSLV GGTNDGDYHN DQSSKSEPGF DSHKPNQLEP AASSEVTKEN GGVEETEKAE 840 EENKNGLSEK IDADDRTDEG KKSKDGKGIR AFKFALVEFV KDLLKPSWKE GQIGKEAYKN 900 IVKKVVDKVT ATMQGTNIPQ TPEKIDQYLS FSKPKLGKLV QAYVEKFQKS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 152 | RSRSRSRSR |
2 | 156 | 164 | RSRSRSRSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-18 | C3H family protein |