PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022721279.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | LSD | ||||||||
Protein Properties | Length: 100aa MW: 11299 Da PI: 8.3975 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.6 | 4.2e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC t+ XP_022721279.1 7 CSGCRSILLYPRGATNVCCALCTTI 31 **********************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence |
MQSQLVCSGC RSILLYPRGA TNVCCALCTT ITQSPPPGLI VCQLEWDGNG LTHMWRLSNI 60 ANVHTWSNKY GEVFTSRKQT YWVNCSRDYA IYFNKPISCS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 7e-16 | LSD family protein |