PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022720460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 784aa MW: 86617.9 Da PI: 6.5593 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.6 | 7.8e-07 | 258 | 277 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C G++C+F H XP_022720460.1 258 ICDFFAK-GWCVKGSSCRFLH 277 6******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 784 aa Download sequence |
MPLSNSAAIP CAEKDDERGA ASTTEREINS SDMEIDDEDD EGEEDLQGSS NRNDASNIVE 60 SKGQDGRLGS DSSIPGKFEK RIPSKTFNVG ESSANFKFSS LPKESLVTQR EDLCTNYEEF 120 KYPTSGKQPA KQNATQDYAV SVKDARVILD RKAPEDRHEQ HINSKSRLVT NEIMYETTNL 180 SSVTGKEVAI NEITSIPIRY HSGGVKALGF EEKCKQMDAQ TEDDKMRIKS RSAAFQTSTG 240 SLSPRAAFNS GNKRPALICD FFAKGWCVKG SSCRFLHIKD SVNNPTQQPE EDVATANGKR 300 AVQLDEGFRN AAERSKSPGS TDSLPSTVGN KIALSSHFFP ERMLPLGHDE NQRLHPFHEI 360 NKFPLLQSKD KSMDTSPFCQ QFSSSTDDLR PSKDGRQNNI GQNLPASLND RGSSTYRNSF 420 LPEYISSLSG SVTSLGNISS ENQSYRVSTW LASLPFSSSR ACSLGAHKVS DNDRDHRTSR 480 LSSLLQGSSP FSSSEPENFP VNDIVRDPLR FAENRIKISS DDWEPSIPFR PSFFVTYGVS 540 SPQSQYDPLR DSIDLPNAGE RFLKFSFSCQ VPSPLNVACP PTYADSTSTG PLVPECNGDK 600 KTASCHNRYR ENVVNGKNYT SGKDSLTTDA DDGTFAADTQ NGTLAREEIS SVASHVKDIS 660 KTNKIDTGRD GGHQSDGSRL KVDKVIEKNE IYDEHKANGY MLKESKAMRH FRVALVDLIK 720 ELLKPTWRDG HLSKDAHNTI VKKAVDKVLG TIQPHQIPIT FESVKQYLSS SQPKIARLVE 780 HVLS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 5e-51 | C3H family protein |