PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022720459.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family C3H
Protein Properties Length: 789aa    MW: 87192.5 Da    PI: 6.6972
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022720459.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.67.8e-07258277525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C+ffa+ G+C  G++C+F H
  XP_022720459.1 258 ICDFFAK-GWCVKGSSCRFLH 277
                     6******.************* PP

Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    
MPLSNSAAIP CAEKDDERGA ASTTEREINS SDMEIDDEDD EGEEDLQGSS NRNDASNIVE  60
SKGQDGRLGS DSSIPGKFEK RIPSKTFNVG ESSANFKFSS LPKESLVTQR EDLCTNYEEF  120
KYPTSGKQPA KQNATQDYAV SVKDARVILD RKAPEDRHEQ HINSKSRLVT NEIMYETTNL  180
SSVTGKEVAI NEITSIPIRY HSGGVKALGF EEKCKQMDAQ TEDDKMRIKS RSAAFQTSTG  240
SLSPRAAFNS GNKRPALICD FFAKGWCVKG SSCRFLHIKD SVNNPTQQPE EDVATANGKR  300
AVQLDEGFRN AAERSKSPGS TDSLPSTVGN KIALSSHFFP ERMLPLGHDE NQRLHPFHEI  360
NKFPLLQSKD KSMDTSPFCQ QFSSSTDDLR PSKDGRQNNI GQNLPASLND RGSSTYRNSF  420
LPEYISSLSG SVTSLGNISS ENQSYRVSTW LASLPFSSSR ACSLGAHKVS DNDRDHRTSR  480
LSSLLQGSSP FSSSEPENFP VNDIVRDPLR FAENRIKISS DDWEPSIPFR PSFFVTYGVS  540
SPQSQYDPLR DSIDLPNAGE RFLKFSFSCQ VPSPLNVACP PTYADSTSTG PLVPECNGDK  600
KTASCHNRYR ENVVNGKNYT SGKDSLTTDA DDGTFAADTQ NGTLAREEIS SVASHVKDIS  660
KTNKIDTGRD GGHQSDGSRL KVDKVIEKNE IYDEHKANGY MLKESKAMRH FRVALVDLIK  720
ELLKPTWRDG HLSKDAHNTI VKKAVDKVLG TIQPHQIPIT FESVKQYLSS SQPKIARLVE  780
GYINKYGKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-56C3H family protein