PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022719585.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 155aa MW: 17143.2 Da PI: 8.2174 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.9 | 1.1e-10 | 60 | 82 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 lC++f++tG+C+yGd+Ck+ H++ XP_022719585.1 60 LCNRFLKTGFCQYGDNCKYFHPK 82 8********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence |
MPLGKYYCDY CGKQFQDTPS ARKRHLQGLQ HLRAKAQWFH SLNATNDPNH SFTEPFAKGL 60 CNRFLKTGFC QYGDNCKYFH PKKDSPTTNP QAAPEPAPES DESNSHNSSF NAPKTLLLSS 120 GVEGAGMGMT WGNLPPSLKP PPEGGYPPLP FVDWG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 1e-29 | C3H family protein |