PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022718493.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 442aa MW: 48206.1 Da PI: 8.5995 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 51 | 77 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_022718493.1 51 PGEPDCSYYIRTGLCRFGATCRFNHPP 77 5789*********************97 PP | |||||||
2 | zf-CCCH | 40.2 | 5.8e-13 | 97 | 122 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_022718493.1 97 GQPECQYYLKTGTCKFGATCKFHHPR 122 5799********************96 PP | |||||||
3 | zf-CCCH | 37.2 | 4.8e-12 | 143 | 168 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C +++rtG+Ck+G++CkF+H++ XP_022718493.1 143 DETECAYYLRTGQCKFGSTCKFHHPQ 168 5789********************97 PP | |||||||
4 | zf-CCCH | 38.5 | 2e-12 | 304 | 329 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ XP_022718493.1 304 DQPECQFYMKTGDCKFGAVCRFHHPR 329 689*********************96 PP | |||||||
5 | zf-CCCH | 40.7 | 3.9e-13 | 349 | 375 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ XP_022718493.1 349 PGEPLCIFYSRYGICKFGPSCKFNHPM 375 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence |
MSRTAAAVAA AAAVAVTEGT SLSLSLNQDD MWQMNLRSSE MMESGPYPER PGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LAIAAARMKG EFPERLGQPE CQYYLKTGTC KFGATCKFHH 120 PRDKVGISGR VSLNILGYPL RPDETECAYY LRTGQCKFGS TCKFHHPQPT NMMVSLRGSP 180 IYPTVPSPTT PGQQSYPGGI TNWSRASFIP SPRWQGPSSY ASLILPXGMV SVPGWNAYSG 240 QLASVSSSEN VQQTNGNNQI YGTSRHNESA TAGSQASFSQ LRSGSVPVGF YALQRENVFP 300 ERPDQPECQF YMKTGDCKFG AVCRFHHPRE RVLPAPDCLL SPIGLPLRPG EPLCIFYSRY 360 GICKFGPSCK FNHPMGIFTY NYSASSPSAA PVRHFLGSSS GTAGLNLSSE GLVEAGSTKP 420 RRVSLSENRQ LSSSDDNIDT EG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | C3H family protein |