PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022718032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 182aa MW: 20488.2 Da PI: 8.6897 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 176.4 | 1.8e-54 | 6 | 159 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 +s++eq+Cy+ Cn Cn ilav+vP +slf++vtvrCG C++l svnla++ q +a ++ +++++ ++e ++ s+s+s+ XP_022718032.1 6 NSAPEQLCYIPCNLCNIILAVNVPCSSLFETVTVRCGQCANLCSVNLATSFQSRAGKDI-------QVANNYTSSEYRFDLG-------SSSRSK 86 6899*********************************************9999999884.......4455554444444433.......333333 PP YABBY 99 eklsenedeevprv.ppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +kl++ ++ + v+rPP+kr r+Ps yn+fikeeiqrik +nPdi+hreafs+aaknWa fP+ihfgl XP_022718032.1 87 NKLPKRAPTITTTPeTVVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDITHREAFSTAAKNWARFPHIHFGL 159 3443333332222203489****************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence |
MSSSNNSAPE QLCYIPCNLC NIILAVNVPC SSLFETVTVR CGQCANLCSV NLATSFQSRA 60 GKDIQVANNY TSSEYRFDLG SSSRSKNKLP KRAPTITTTP ETVVNRPPDK RHRAPSLYNQ 120 FIKEEIQRIK LNNPDITHRE AFSTAAKNWA RFPHIHFGLM LETDSQPKLN DDSTEHFQQL 180 LK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.1 | 4e-79 | YABBY family protein |