PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022717924.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family LSD
Protein Properties Length: 132aa    MW: 13829.2 Da    PI: 7.7412
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022717924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.62.1e-131135125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gC++lL YP GA+sV+Ca+C++V
  XP_022717924.1 11 CSGCQNLLLYPVGATSVCCAVCNAV 35
                    ************************9 PP

2zf-LSD1474.1e-154872125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+tlL+Y rGA+sV+C++C+tV
  XP_022717924.1 48 CGGCHTLLMYIRGATSVQCSCCHTV 72
                    ************************9 PP

3zf-LSD142.31.2e-1395119125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL+Y +GA+sV+Ca+C++V
  XP_022717924.1  95 CGNCRMLLMYQYGASSVKCAVCNFV 119
                     ***********************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    
MSSGAQSQLV CSGCQNLLLY PVGATSVCCA VCNAVTAVPP PEMAQLVCGG CHTLLMYIRG  60
ATSVQCSCCH TVNLALEASN FPSLLTANQV AHVNCGNCRM LLMYQYGASS VKCAVCNFVT  120
SVRVSTLFVL TH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.34e-55LSD family protein