PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022717924.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

LSD

Protein Properties

Length: 132aa MW: 13829.2 Da PI: 7.7412

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022717924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.6	2.1e-13	11	35	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC++lL YP GA+sV+Ca+C++V XP_022717924.1 11 CSGCQNLLLYPVGATSVCCAVCNAV 35 ************************9 PP
2	zf-LSD1	47	4.1e-15	48	72	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV XP_022717924.1 48 CGGCHTLLMYIRGATSVQCSCCHTV 72 ************************9 PP
3	zf-LSD1	42.3	1.2e-13	95	119	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V XP_022717924.1 95 CGNCRMLLMYQYGASSVKCAVCNFV 119 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence
MSSGAQSQLV CSGCQNLLLY PVGATSVCCA VCNAVTAVPP PEMAQLVCGG CHTLLMYIRG 60 ATSVQCSCCH TVNLALEASN FPSLLTANQV AHVNCGNCRM LLMYQYGASS VKCAVCNFVT 120 SVRVSTLFVL TH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	4e-55	LSD family protein