PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022717825.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 142aa MW: 15519 Da PI: 10.848 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.4 | 5.9e-16 | 4 | 40 | 14 | 50 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeys 50 skRr ++KKA ELS+LC+a+va++ +s++gk+ ++ XP_022717825.1 4 SKRRGNLFKKATELSTLCGARVAIVTISEKGKVSMFP 40 8********************************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence |
MATSKRRGNL FKKATELSTL CGARVAIVTI SEKGKVSMFP NSDTVIHRYV TRKGSLKSTS 60 GNGMMKLRKK QHVEGAKKEA VKKAEMKELM NNQSAEKAVG VDIATPVDLR SQWPGVTCAA 120 EWSSSIADVI LNSRSDMGSR KF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-12 | M-type_MADS family protein |