PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022717699.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 362aa MW: 39268.1 Da PI: 7.2349

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022717699.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.5e-08	91	115	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_022717699.1 91 FKTKLCCKFRA-GTCPYITNCNFAHS 115 69*******.***********8 PP
2	zf-CCCH	18.6	3.3e-06	165	190	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_022717699.1 165 YKGRHCKKFYTEEGCPYGDSCTFLHD 190 78888********************7 PP
3	zf-CCCH	43	7.6e-14	241	266	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_022717699.1 241 WKTRICNKWELTGYCPFGNKCHFAHG 266 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MDYSRENVVH VIPTNGPDNW VPNSTDPSVW ATEEDYRVWN NQETSSDTPS NSSYDQRHPQ 60 SRSNSEQPPN KKSRNSQELN SRSKAIGKMF FKTKLCCKFR AGTCPYITNC NFAHSIEELR 120 RPPPNWQEIV AAHEEEKGIL SEPREEYQIP SLGSSSFTGE TQRSYKGRHC KKFYTEEGCP 180 YGDSCTFLHD EQSKNRESVA ISLGPGGYGG GAGGGGGGGG GGSGGGGGGN GNGSNAKPSN 240 WKTRICNKWE LTGYCPFGNK CHFAHGVAEL HRYGGGLVDV ETKDSSATPS DTKQGGGVPS 300 KTPADTAAAS VPSVPLSDVY HLGVPSQRTS IVLQRPGQRT LQKWKGPDKI SLIYGDWIDD 360 IE

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MDYSRENVVH VIPTNGPDNW VPNSTDPSVW ATEEDYRVWN NQETSSDTPS NSSYDQRHPQ  60
SRSNSEQPPN KKSRNSQELN SRSKAIGKMF FKTKLCCKFR AGTCPYITNC NFAHSIEELR  120
RPPPNWQEIV AAHEEEKGIL SEPREEYQIP SLGSSSFTGE TQRSYKGRHC KKFYTEEGCP  180
YGDSCTFLHD EQSKNRESVA ISLGPGGYGG GAGGGGGGGG GGSGGGGGGN GNGSNAKPSN  240
WKTRICNKWE LTGYCPFGNK CHFAHGVAEL HRYGGGLVDV ETKDSSATPS DTKQGGGVPS  300
KTPADTAAAS VPSVPLSDVY HLGVPSQRTS IVLQRPGQRT LQKWKGPDKI SLIYGDWIDD  360
IE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-136	C3H family protein