PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022714636.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

LSD

Protein Properties

Length: 388aa MW: 41953.4 Da PI: 8.7526

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022714636.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.4	9.8e-13	225	249	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrG+++V+CalC+t+ XP_022714636.1 225 CSGCRSILLYPRGSTNVCCALCNTI 249 ***********************97 PP
2	zf-LSD1	47.9	2.2e-15	264	288	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+t+ XP_022714636.1 264 CGGCRTLLMYTRGATSVRCSCCHTI 288 ***********************97 PP
3	zf-LSD1	46.4	6.3e-15	302	326	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V XP_022714636.1 302 CGHCRTTLMYPYGAPSVKCAVCQYV 326 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MMNIFKKKTS PKDALRTSKR EMAVATRGIE REIASLQLEE KKLVAEIKKT AKTGNEAATR 60 ILARQLVRLR QQITNLQGSR AQIRGVATHT QALYASTSIS TGMKGATKAM VAMNKQMAPA 120 KQAKVIREFQ KQSAQMDMTI EMMSEAIDET LDKDEAEEET EELTNQVLDE IGVDIASQLS 180 SAPKGRIASR NAAPAPEVNA RSESTDVDEL EKRLASLHMQ SQLVCSGCRS ILLYPRGSTN 240 VCCALCNTIT QVPPPGMEMA QLICGGCRTL LMYTRGATSV RCSCCHTINL APASNQIAHI 300 NCGHCRTTLM YPYGAPSVKC AVCQYVTNVG MGNVRVPHPL NRPNGMSAAG TMPSTSTSQT 360 VVVENPMSVD ESGKLVSNVV VGITTDKK

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MMNIFKKKTS PKDALRTSKR EMAVATRGIE REIASLQLEE KKLVAEIKKT AKTGNEAATR  60
ILARQLVRLR QQITNLQGSR AQIRGVATHT QALYASTSIS TGMKGATKAM VAMNKQMAPA  120
KQAKVIREFQ KQSAQMDMTI EMMSEAIDET LDKDEAEEET EELTNQVLDE IGVDIASQLS  180
SAPKGRIASR NAAPAPEVNA RSESTDVDEL EKRLASLHMQ SQLVCSGCRS ILLYPRGSTN  240
VCCALCNTIT QVPPPGMEMA QLICGGCRTL LMYTRGATSV RCSCCHTINL APASNQIAHI  300
NCGHCRTTLM YPYGAPSVKC AVCQYVTNVG MGNVRVPHPL NRPNGMSAAG TMPSTSTSQT  360
VVVENPMSVD ESGKLVSNVV VGITTDKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	4e-79	LSD family protein