PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr22133.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 290aa MW: 32776.6 Da PI: 9.6715

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr22133.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.1e-06	39	61	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Dr22133.1 39 FVCEICNKGFQRDQNLQLHRRGH 61 89*******************88 PP
2	zf-C2H2	13	0.0003	116	138	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k++ s+ k H++t+ Dr22133.1 116 WKCDRCSKRYAVLSDWKAHLKTC 138 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence
MFQHSMSMLK KKRNQPGNPD PDAEVVAMSP KSLMATNRFV CEICNKGFQR DQNLQLHRRG 60 HNLPWKLRQK SNKEVMKKKV YVCPESTCVH HHPSRALGDL TGIKKHYCRK HGEKKWKCDR 120 CSKRYAVLSD WKAHLKTCGT KEYTCDCGTL FSRKDSFLTH RAFCDALAQE SATLISMKLP 180 HELPQPSLHH ELHSLNPNPK PNPSLSAMAL LQKATAMRSF PLNGCDLTTW RNEDRPTRDF 240 IGAVDVRVGN AAAVEAPAPA PAEDNVEQPV SVAVDPVTRG EHTRWFTTFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-107	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr22133.1