PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr21119.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family SBP
Protein Properties Length: 372aa    MW: 39830.4 Da    PI: 8.7099
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr21119.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.12.6e-4391166176
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                +CqvegC++dls ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  Dr21119.1  91 RCQVEGCKVDLSGAKAYYSRHKVCGMHSKSPKVIVNGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 166
                6*************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MGRSSREGGG GGGGGGGGME MGSGSKEVSG ATVSSDNLSG LSIGRKIYFE DGGGGGGGGG  60
SSSESLATAL EKPPAPKKGK GVVQGVPQPP RCQVEGCKVD LSGAKAYYSR HKVCGMHSKS  120
PKVIVNGLEQ RFCQQCSRFH QLPEFDQGKR SCRRRLAGHN ERRRKPPPVP LSSRYGRLPS  180
LQEESTRYRS FLMNFSYPRP PIREVWPTIR AGDRIASSHC QGGFGPPTSR SQEHGAQQYV  240
QGSIGGTLFS NPETHQPVEC LAGVSDSSCA LSLLSTQPWC TSTRSQTPTM PTSISFEGAL  300
MAHPVSGVNN YQAVHCYDFQ GHEVHHEMGT MQVSQNGNAH FSGELELALQ APSGRNYDQS  360
THCHCHGMHW SL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-53SBP family protein