PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr20894.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

G2-like

Protein Properties

Length: 348aa MW: 39323.4 Da PI: 9.3729

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr20894.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.2	1.9e-33	33	87	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Dr20894.1 33 KPRLRWTVELHDRFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 87 79****************************************************8 PP
2	Myb_DNA-binding	70.9	2.1e-22	35	86	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT e+++++vdav+qlGg+ t+ktI+r mg kg+tl+++ks++qk++ Dr20894.1 35 RLRWTVELHDRFVDAVTQLGGPdkaTPKTIMRVMGvKGLTLYHLKSHLQKFR 86 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MFHSKKPTTM NNSHERPMCV QGDSGLVLTT DPKPRLRWTV ELHDRFVDAV TQLGGPDKAT 60 PKTIMRVMGV KGLTLYHLKS HLQKFRLGKQ PHKEFNEIQI KEDMQRNAAS SSGMMPRNMN 120 KNVHITEAIR MQMEVQRRLH EQLEVQKHLQ MRIEAQGKYM QSILEKACQT ITVDNLATLG 180 NMKDMNSQMS FPCLQDLHIY GXNGGDQIDM QKHLERSSLD GFLHNDDNSC DLGKKRSNPS 240 NGKNPMIWTD DLLRFQDQMG SQEEPSKSSG HLQIAPSLIG ATGIDIDSMP NVYESKPMIS 300 TDSGGENKRH GRSSIERPSP RRSPLDGERI NSMIRGGTSP QTRNLSYG

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MFHSKKPTTM NNSHERPMCV QGDSGLVLTT DPKPRLRWTV ELHDRFVDAV TQLGGPDKAT  60
PKTIMRVMGV KGLTLYHLKS HLQKFRLGKQ PHKEFNEIQI KEDMQRNAAS SSGMMPRNMN  120
KNVHITEAIR MQMEVQRRLH EQLEVQKHLQ MRIEAQGKYM QSILEKACQT ITVDNLATLG  180
NMKDMNSQMS FPCLQDLHIY GXNGGDQIDM QKHLERSSLD GFLHNDDNSC DLGKKRSNPS  240
NGKNPMIWTD DLLRFQDQMG SQEEPSKSSG HLQIAPSLIG ATGIDIDSMP NVYESKPMIS  300
TDSGGENKRH GRSSIERPSP RRSPLDGERI NSMIRGGTSP QTRNLSYG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-104	G2-like family protein

Link Out ? help Back to Top
Ensembl	Dr20894.1