PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr20766.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

AP2

Protein Properties

Length: 469aa MW: 52363.9 Da PI: 8.4022

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr20766.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.6	1.3e-12	230	286	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g Dr20766.1 230 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 286 78*****************77776664346655.77****************98 PP
2	AP2	47.5	4.6e-15	329	380	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Dr20766.1 329 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 380 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MMISCFPPDI LGGLLMNMEV SEESMKQAQP APSATVSSAL PFSFFFPPNH STSSQMTYGV 60 EELYSQLSVM PLRSDGSLCI REALSRSQQE EITVKSSSPK LEDLFSGING YPHQNTEQQT 120 LQREGMFSGL AGQEIFQQPL GEELVAEAGI SSLKNLATQG LGYEDLHYLS LSMNPVPQSS 180 YSIASQYLSP PASAPQFMAL NSTKKKGTGK GVQKQPVHRK TIDSFGQRTS QYRGVTRHRW 240 TGRYEAHLWD NSCKKEGQTR KGRQGGYDME EKAARAYDLA ALKYWGPSTH INFPVSLNNF 300 NFFEKQSASE FYGVFDFMQK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT 360 FSTQEEAAEA YDIAAIKFRG GNAVTNFKIT RYDVEKIMAS STLLTADLAR RSTDTPVKKV 420 LHLTDQEHTN GDGGSDWKMI FELHNKPHPM YISATSWIPM ADQLSWFIA

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MMISCFPPDI LGGLLMNMEV SEESMKQAQP APSATVSSAL PFSFFFPPNH STSSQMTYGV  60
EELYSQLSVM PLRSDGSLCI REALSRSQQE EITVKSSSPK LEDLFSGING YPHQNTEQQT  120
LQREGMFSGL AGQEIFQQPL GEELVAEAGI SSLKNLATQG LGYEDLHYLS LSMNPVPQSS  180
YSIASQYLSP PASAPQFMAL NSTKKKGTGK GVQKQPVHRK TIDSFGQRTS QYRGVTRHRW  240
TGRYEAHLWD NSCKKEGQTR KGRQGGYDME EKAARAYDLA ALKYWGPSTH INFPVSLNNF  300
NFFEKQSASE FYGVFDFMQK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  360
FSTQEEAAEA YDIAAIKFRG GNAVTNFKIT RYDVEKIMAS STLLTADLAR RSTDTPVKKV  420
LHLTDQEHTN GDGGSDWKMI FELHNKPHPM YISATSWIPM ADQLSWFIA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-116	AP2 family protein

Link Out ? help Back to Top
Ensembl	Dr20766.1