PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr20158.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family ERF
Protein Properties Length: 348aa    MW: 39335.5 Da    PI: 5.3984
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr20158.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19117165355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a ++k++g
  Dr20158.1 117 YRGIRRRP-WGKWAAEIRDPRK---GSRVWLGTFNTAEEAARAYDAEARKIRG 165
                9*******.**********954...3************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MCGGAIISDY IPPARSRRLA AEILWPDLEK NNKASGFKSW EWEFDDDFEA DFQQFIAEPE  60
VKEKEKKAMG IGVTKPISSF QLSKVPFSHE AVAIPLKPKK LDEPLKKPAE RKRKNLYRGI  120
RRRPWGKWAA EIRDPRKGSR VWLGTFNTAE EAARAYDAEA RKIRGDKAKV NFPEEAPLST  180
EKFTPKAIPS QMPKLDGSFN CVKNPVDGLH STEFSDQKYE VAQSDFLNAY SLMKPQMNVQ  240
SGFSFEQDIK STEITPVCAA NTVKSNESPV CEDVNPHKKL KNNYGEAVPA EESTELEFYM  300
KFLQMPCIDG NKSESIDNIF SNVAAPEYGG NDVDLWNFDD LPMISSIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-40ERF family protein