PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr18964.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

AP2

Protein Properties

Length: 514aa MW: 57001.7 Da PI: 6.8619

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr18964.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.6e-17	156	205	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Dr18964.1 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 205 78*****************......55**********************997 PP
2	AP2	43.8	6.5e-14	248	298	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Dr18964.1 248 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 298 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MWDLNDSPDQ PPASAMVTAA PGSDEDESVS KGKAVESAAS TADDNSSSSA IVIADDDDCA 60 GALAGAGKIF GFSVGESYSG ESEPPVVTRQ FFPVEKMSSE ADGVGASSGC SSLPRAHWVG 120 VQFRQSSEPG GVAGVKPMEV SQPIKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFSLDDYEED LKQMSNLTKE EFVHVLRRQS 240 TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEIEAARAYD KAAIKCNGKD 300 AVTNFDPSIY EPELNSSAXQ LDHNLDLSLG SSGSKRSGLE VMDEDNNGAM MDQRVPFAME 360 PDWRSNNRTT RPKFDDKLKL PEYEPQISSK GSEIYRYQQQ PPQVFQIIQQ QFHNPGSHQY 420 QNSEGMKSIA GNLSLALSED HHHHHHHHHQ HYQQQQQHRQ TWPPPGIAMT QFSAAASSGF 480 PPQSTNTATT TTTTTTMKSP QNWLQKNLFH SRPY

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MWDLNDSPDQ PPASAMVTAA PGSDEDESVS KGKAVESAAS TADDNSSSSA IVIADDDDCA  60
GALAGAGKIF GFSVGESYSG ESEPPVVTRQ FFPVEKMSSE ADGVGASSGC SSLPRAHWVG  120
VQFRQSSEPG GVAGVKPMEV SQPIKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFSLDDYEED LKQMSNLTKE EFVHVLRRQS  240
TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEIEAARAYD KAAIKCNGKD  300
AVTNFDPSIY EPELNSSAXQ LDHNLDLSLG SSGSKRSGLE VMDEDNNGAM MDQRVPFAME  360
PDWRSNNRTT RPKFDDKLKL PEYEPQISSK GSEIYRYQQQ PPQVFQIIQQ QFHNPGSHQY  420
QNSEGMKSIA GNLSLALSED HHHHHHHHHQ HYQQQQQHRQ TWPPPGIAMT QFSAAASSGF  480
PPQSTNTATT TTTTTTMKSP QNWLQKNLFH SRPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-115	AP2 family protein

Link Out ? help Back to Top
Ensembl	Dr18964.1