PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr18946.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB_related

Protein Properties

Length: 597aa MW: 67102.1 Da PI: 5.8241

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr18946.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.4e-08	482	530	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E ++lvd+v++lG g W+ I r + Rt ++k++w+++l Dr18946.1 482 AWTLCEVLKLVDGVARLGAGKWSEIKRIAFasyTYRTSVDLKDKWRNLL 530 7************************9999**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MGTLVDTEIN RDYNADSSSS NPVADTVVYQ LVRVEDDGRL FPATVDEVMK AEHLLEDDKN 60 ELSQVETTAH TGKQIPNESI SFKKCESSEG LSQSESNAVD LSKLKFKVQE ESLPLAQTLD 120 NSSKKEDVDT QLNDHCNHIN SSIEKVNRED NAQSKGLNDS HVASLGSGET CLEPVNEAVT 180 NVSLDSETCF SSMPDFSILN GEXHLDSLTI RELQEAFWAT FGRRTSVKDK LWLKRRIAMG 240 LTNSCDIPSG NFTIKDNKIV RKDDAKELPC SLQASNLEAV PLPTEQLVSP IDDTYESSQR 300 FSPANQEEDQ QQSSCKRNRE TIXECDVKSA DISEEPCVAK RVRKPTKRYI EELSEFEPRE 360 CTGKVFTPSR ISEQCHSSSK SRSRPTHVIG LQGKTSVTRQ DSLGGFTVHI PYVCRVRRQR 420 PRKSFMAFMN FVDSESEKTD REHFDISERD IQHGMADNSG DNSDDNAYTK LEGSNKRKHH 480 RAWTLCEVLK LVDGVARLGA GKWSEIKRIA FASYTYRTSV DLKDKWRNLL RASFALRTTE 540 KGAKISRKPS SLPIPIPILM RVRELAEMHS KXGIDFTTRT LSDEGSTVLK ENDTGFL

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MGTLVDTEIN RDYNADSSSS NPVADTVVYQ LVRVEDDGRL FPATVDEVMK AEHLLEDDKN  60
ELSQVETTAH TGKQIPNESI SFKKCESSEG LSQSESNAVD LSKLKFKVQE ESLPLAQTLD  120
NSSKKEDVDT QLNDHCNHIN SSIEKVNRED NAQSKGLNDS HVASLGSGET CLEPVNEAVT  180
NVSLDSETCF SSMPDFSILN GEXHLDSLTI RELQEAFWAT FGRRTSVKDK LWLKRRIAMG  240
LTNSCDIPSG NFTIKDNKIV RKDDAKELPC SLQASNLEAV PLPTEQLVSP IDDTYESSQR  300
FSPANQEEDQ QQSSCKRNRE TIXECDVKSA DISEEPCVAK RVRKPTKRYI EELSEFEPRE  360
CTGKVFTPSR ISEQCHSSSK SRSRPTHVIG LQGKTSVTRQ DSLGGFTVHI PYVCRVRRQR  420
PRKSFMAFMN FVDSESEKTD REHFDISERD IQHGMADNSG DNSDDNAYTK LEGSNKRKHH  480
RAWTLCEVLK LVDGVARLGA GKWSEIKRIA FASYTYRTSV DLKDKWRNLL RASFALRTTE  540
KGAKISRKPS SLPIPIPILM RVRELAEMHS KXGIDFTTRT LSDEGSTVLK ENDTGFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	417	423	RRQRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	2e-76	MYB_related family protein

Link Out ? help Back to Top
Ensembl	Dr18946.1