PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr18632.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

AP2

Protein Properties

Length: 560aa MW: 62321.8 Da PI: 8.1186

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr18632.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.5	5.8e-12	265	321	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g Dr18632.1 265 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 321 78*****************433.44555535555.779999************98 PP
2	AP2	46.3	1.1e-14	366	415	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Dr18632.1 366 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 415 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MDMSSWLGFS LSPLRAASSK EHTSCYGEEE EAAAAHAHAH AAAQVPFGAM PLRSDGSVCL 60 LEPPFRTPCH EWRXGATSSG NQVENKGPKL EDFLGHGYTE NSNEIYYHNS NSYRINVNMP 120 PSFSPAETEA REDTQTPYHV IHSNFHHRPN ILLSNTNPNT HPNPLYNLGF DGGATSLSGF 180 KCWLRQHHYT PEKTAGESPE CNVQSLSLSV NHGALPGSND QAIITSSSSS SSSLLVDGRK 240 RSMAKSTSRE PAARKSIETF GQRTSQYRGV TRHRWTGRYE AHLWDNSCRK EGQTRKGRQG 300 GYDKEEKAAR AYDLAALKYW GPTTNINFPL STYEKELEEM KHMTRQEFVA NLRRKSSGFS 360 RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLSAVT 420 NFDISKYDVK RICSSTHLIG SDLAKRSPKD AELQPTEPPS RASGITNSNT DINDFSDMQM 480 IYHNKVEPQL SQLQPDITPS IVNTTKHESP RNSDYGDYSP GLYYGNGGMN WMVPVPASAR 540 PPPAGFPVVH QLPMFAPWTD

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MDMSSWLGFS LSPLRAASSK EHTSCYGEEE EAAAAHAHAH AAAQVPFGAM PLRSDGSVCL  60
LEPPFRTPCH EWRXGATSSG NQVENKGPKL EDFLGHGYTE NSNEIYYHNS NSYRINVNMP  120
PSFSPAETEA REDTQTPYHV IHSNFHHRPN ILLSNTNPNT HPNPLYNLGF DGGATSLSGF  180
KCWLRQHHYT PEKTAGESPE CNVQSLSLSV NHGALPGSND QAIITSSSSS SSSLLVDGRK  240
RSMAKSTSRE PAARKSIETF GQRTSQYRGV TRHRWTGRYE AHLWDNSCRK EGQTRKGRQG  300
GYDKEEKAAR AYDLAALKYW GPTTNINFPL STYEKELEEM KHMTRQEFVA NLRRKSSGFS  360
RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLSAVT  420
NFDISKYDVK RICSSTHLIG SDLAKRSPKD AELQPTEPPS RASGITNSNT DINDFSDMQM  480
IYHNKVEPQL SQLQPDITPS IVNTTKHESP RNSDYGDYSP GLYYGNGGMN WMVPVPASAR  540
PPPAGFPVVH QLPMFAPWTD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-125	AP2 family protein

Link Out ? help Back to Top
Ensembl	Dr18632.1